Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CDH88_RS23160 Genome accession   NZ_CP021840
Coordinates   4590016..4590492 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain EC974     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4585016..4595492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH88_RS23125 (CDH88_23110) - 4585180..4586085 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  CDH88_RS23130 (CDH88_23115) - 4586082..4587152 (+) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  CDH88_RS23135 (CDH88_23120) - 4587288..4587971 (+) 684 WP_000775500.1 hypothetical protein -
  CDH88_RS23140 (CDH88_23125) - 4587987..4588397 (+) 411 WP_000846713.1 hypothetical protein -
  CDH88_RS23150 (CDH88_23135) - 4588618..4589439 (+) 822 WP_001234530.1 DUF932 domain-containing protein -
  CDH88_RS23155 (CDH88_23140) - 4589521..4590000 (+) 480 WP_000860076.1 antirestriction protein -
  CDH88_RS23160 (CDH88_23145) radC 4590016..4590492 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  CDH88_RS23165 (CDH88_23150) yeeT 4590555..4590776 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  CDH88_RS23170 (CDH88_23155) cbeA 4590850..4591218 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CDH88_RS23175 (CDH88_23160) cbtA 4591307..4591680 (+) 374 Protein_4266 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CDH88_RS23185 (CDH88_23170) yeeW 4591677..4591871 (+) 195 WP_000988600.1 DUF5983 family protein -
  CDH88_RS28305 - 4591917..4591997 (+) 81 Protein_4268 hypothetical protein -
  CDH88_RS29170 - 4592486..4592668 (+) 183 WP_157698277.1 EutP/PduV family microcompartment system protein -
  CDH88_RS23195 (CDH88_23180) tmaR 4592769..4593098 (-) 330 WP_000450409.1 DUF496 family protein -
  CDH88_RS23200 (CDH88_23185) yeeA 4593270..4594328 (-) 1059 WP_001200890.1 FUSC family protein -
  CDH88_RS23205 (CDH88_23190) sbmC 4594526..4594999 (-) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=196637 CDH88_RS23160 WP_001186773.1 4590016..4590492(+) (radC) [Escherichia coli strain EC974]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=196637 CDH88_RS23160 WP_001186773.1 4590016..4590492(+) (radC) [Escherichia coli strain EC974]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392