Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CDH88_RS09770 Genome accession   NZ_CP021840
Coordinates   1934729..1935205 (-) Length   158 a.a.
NCBI ID   WP_001384029.1    Uniprot ID   -
Organism   Escherichia coli strain EC974     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1929729..1940205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH88_RS29115 - 1930855..1931014 (-) 160 Protein_1780 integrase -
  CDH88_RS09735 (CDH88_09730) - 1931478..1931804 (-) 327 WP_000779482.1 type II toxin-antitoxin system RelE/ParE family toxin -
  CDH88_RS09740 (CDH88_09735) - 1931801..1932064 (-) 264 WP_001143297.1 type II toxin-antitoxin system ParD family antitoxin -
  CDH88_RS09745 (CDH88_09740) - 1932136..1933002 (-) 867 WP_039023551.1 DUF4942 domain-containing protein -
  CDH88_RS09750 - 1933087..1933284 (-) 198 WP_088172489.1 DUF957 domain-containing protein -
  CDH88_RS28105 - 1933342..1933509 (-) 168 Protein_1785 DUF5983 family protein -
  CDH88_RS09755 (CDH88_09750) - 1933506..1933883 (-) 378 WP_039023548.1 TA system toxin CbtA family protein -
  CDH88_RS09760 (CDH88_09755) - 1933973..1934341 (-) 369 WP_001285607.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CDH88_RS09765 (CDH88_09760) - 1934421..1934642 (-) 222 WP_000692350.1 DUF987 domain-containing protein -
  CDH88_RS09770 (CDH88_09765) radC 1934729..1935205 (-) 477 WP_001384029.1 RadC family protein Machinery gene
  CDH88_RS09775 (CDH88_09770) - 1935220..1935705 (-) 486 WP_000213722.1 antirestriction protein -
  CDH88_RS09780 (CDH88_09775) - 1935797..1936615 (-) 819 WP_001175175.1 DUF932 domain-containing protein -
  CDH88_RS09785 (CDH88_09780) - 1936705..1936914 (-) 210 WP_032150870.1 DUF905 family protein -
  CDH88_RS09790 (CDH88_09785) - 1936944..1937621 (-) 678 WP_001097301.1 hypothetical protein -
  CDH88_RS09795 (CDH88_09790) - 1937769..1938449 (-) 681 WP_001282919.1 WYL domain-containing protein -
  CDH88_RS09800 (CDH88_09795) - 1938652..1939536 (-) 885 WP_000010408.1 GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17656.25 Da        Isoelectric Point: 6.9859

>NTDB_id=196608 CDH88_RS09770 WP_001384029.1 1934729..1935205(-) (radC) [Escherichia coli strain EC974]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=196608 CDH88_RS09770 WP_001384029.1 1934729..1935205(-) (radC) [Escherichia coli strain EC974]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCGGGTGAAACCCTCTTCACAGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGGCTTATCACTGAACGTCTGGTACAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTATTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392