Detailed information NTG0196600

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: CDH88_RS08545
• Genome accession: NZ_CP021840
• Coordinates: 1686225..1687250 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain EC974
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1681225..1692250

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDH88_RS08520 (CDH88_08515)	rraA	1681639..1682124 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
CDH88_RS08525 (CDH88_08520)	menA	1682217..1683143 (-)	927	WP_001308187.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
CDH88_RS08530 (CDH88_08525)	hslU	1683210..1684541 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
CDH88_RS08535 (CDH88_08530)	hslV	1684551..1685081 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
CDH88_RS08540 (CDH88_08535)	ftsN	1685174..1686133 (-)	960	WP_000068837.1	cell division protein FtsN	-
CDH88_RS08545 (CDH88_08540)	cytR	1686225..1687250 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
CDH88_RS08550 (CDH88_08545)	priA	1687406..1689604 (-)	2199	WP_021578174.1	primosomal protein N'	Machinery gene
CDH88_RS08555 (CDH88_08550)	rpmE	1689807..1690019 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
CDH88_RS08560 (CDH88_08555)	yiiX	1690080..1690688 (-)	609	WP_000877403.1	YiiX family permuted papain-like enzyme	-
CDH88_RS08565 (CDH88_08560)	metJ	1690872..1691189 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=196600 CDH88_RS08545 WP_000644904.1 1686225..1687250(-) (cytR) [Escherichia coli strain EC974]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=196600 CDH88_RS08545 WP_000644904.1 1686225..1687250(-) (cytR) [Escherichia coli strain EC974]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATAGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628