Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BHS01_RS09510 Genome accession   NZ_CP017195
Coordinates   1947039..1948811 (-) Length   590 a.a.
NCBI ID   WP_079507397.1    Uniprot ID   -
Organism   Lactococcus paracarnosus strain TMW 2.1615     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1942039..1953811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS01_RS09490 (BHS01_09495) - 1943539..1943838 (-) 300 WP_109835330.1 bacteriocin immunity protein -
  BHS01_RS09495 (BHS01_09500) - 1943900..1944244 (-) 345 WP_109835331.1 winged helix-turn-helix transcriptional regulator -
  BHS01_RS09500 (BHS01_09505) - 1944354..1945091 (+) 738 WP_188347991.1 NADPH-dependent oxidoreductase -
  BHS01_RS09505 (BHS01_09510) rcrQ 1945174..1947039 (-) 1866 WP_109835333.1 ABC transporter ATP-binding protein Regulator
  BHS01_RS09510 (BHS01_09515) rcrP 1947039..1948811 (-) 1773 WP_079507397.1 ABC transporter ATP-binding protein Regulator
  BHS01_RS09515 (BHS01_09520) - 1948804..1949280 (-) 477 WP_162542461.1 MarR family winged helix-turn-helix transcriptional regulator -
  BHS01_RS09520 (BHS01_09525) - 1949442..1950374 (+) 933 WP_109835335.1 alpha/beta hydrolase -
  BHS01_RS09525 (BHS01_09530) lysS 1950653..1952140 (+) 1488 WP_109835336.1 lysine--tRNA ligase -
  BHS01_RS09530 (BHS01_09535) - 1952272..1953207 (-) 936 WP_109835337.1 D-2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 64751.12 Da        Isoelectric Point: 8.5209

>NTDB_id=196589 BHS01_RS09510 WP_079507397.1 1947039..1948811(-) (rcrP) [Lactococcus paracarnosus strain TMW 2.1615]
MFKILKKLTGKELRYVGISLIFIITQVYLDLKLPDYMSKVTKLIQEKGTTVSQIFDQGKWMVLCALGSLAAAIVVGYFAA
RVAAGLSRTLRHDVYHQVSEYSMAEINQFSTASLITRSTNDITQVQMFVAMGLQLIIKAPITAVWAIFKIADKSWEWTTA
LGVAVLFILVAISIIVTLAMPRFKIIQKLTDKLNSVTRENLTGIHVVRAYNAEGYQTEKFERANADITSTNLFIQRVMAF
MMPMMSMVSSGLSVAVYLIGATIIKNAAIGTPGNSPRINLFSDMVVFTSYGMQVVMAFMMLTMIFIMMPRANVSAGRINE
VIDTDSSIKNGTKDGDAATEVGTVEFKNVYFQYADASEHVIEGISFKANKGETVAFIGSTGSGKSTLINLIPRYYDVTAG
QVLVDGVNVKDYTENALHNKMGFIPQKPVMFNGTIRSNLAFGTNAGGDLTDEALMSAVRLAQAEEFVTKNEKGLDAEISQ
GGLNLSGGQKQRLAIARALARRPEILVFDDSFSALDYKTDRVLRDTLNRETAETTKLIVAQRIGTIIDADQIIVLDKGKV
VGHGTHTELLASNPVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=196589 BHS01_RS09510 WP_079507397.1 1947039..1948811(-) (rcrP) [Lactococcus paracarnosus strain TMW 2.1615]
ATGTTTAAAATACTGAAAAAGCTCACTGGAAAAGAGCTTCGCTATGTTGGCATTAGCCTTATTTTTATCATCACACAGGT
CTATTTGGACTTGAAATTACCTGATTATATGAGTAAGGTTACAAAATTAATCCAAGAAAAAGGAACGACTGTTTCTCAGA
TTTTTGATCAAGGGAAATGGATGGTGCTGTGTGCTTTAGGCTCGCTTGCAGCAGCAATTGTCGTCGGCTATTTTGCGGCT
CGTGTTGCAGCTGGTCTGTCACGAACGCTTCGTCACGATGTCTACCATCAGGTATCTGAGTACTCGATGGCTGAAATCAA
TCAGTTTTCAACAGCAAGTTTGATAACACGCTCGACAAATGATATCACACAAGTGCAAATGTTTGTTGCCATGGGCTTAC
AGCTGATTATAAAAGCGCCGATTACAGCAGTATGGGCTATTTTTAAGATTGCAGATAAGTCTTGGGAATGGACGACAGCG
CTAGGTGTTGCGGTGCTATTTATCTTGGTTGCCATCAGTATTATTGTCACTCTTGCTATGCCAAGATTTAAGATTATCCA
AAAGTTAACGGATAAATTGAACTCGGTTACCCGAGAAAATTTGACAGGGATTCATGTTGTACGCGCCTATAATGCAGAAG
GCTATCAAACAGAAAAATTTGAGCGAGCAAATGCTGATATCACATCAACGAATCTATTTATTCAACGTGTCATGGCCTTC
ATGATGCCTATGATGTCGATGGTTTCATCTGGCCTTTCAGTTGCTGTTTATCTGATTGGTGCAACGATCATCAAAAATGC
AGCGATTGGTACACCAGGGAATTCACCACGGATTAATTTGTTTTCTGATATGGTCGTCTTTACTTCTTATGGCATGCAAG
TCGTCATGGCCTTCATGATGCTGACGATGATTTTCATCATGATGCCACGTGCTAATGTATCTGCTGGCCGGATTAATGAG
GTGATCGATACAGACTCATCTATCAAAAATGGTACGAAAGATGGCGATGCTGCAACAGAAGTTGGGACAGTTGAGTTTAA
AAACGTCTACTTCCAATATGCGGATGCTTCTGAACATGTGATCGAAGGCATATCATTTAAGGCAAATAAAGGGGAAACTG
TCGCCTTTATCGGCTCTACTGGGTCTGGTAAATCCACTTTAATTAATCTTATTCCGCGTTACTATGATGTCACAGCAGGT
CAAGTGTTGGTTGATGGTGTCAATGTTAAGGATTATACGGAAAATGCCCTACATAATAAAATGGGCTTTATCCCGCAAAA
ACCAGTCATGTTTAATGGGACAATTCGATCTAACTTGGCCTTTGGGACAAATGCAGGTGGTGACTTAACTGATGAGGCCC
TTATGTCAGCAGTTCGTCTTGCACAAGCAGAAGAATTTGTCACAAAAAATGAAAAAGGCTTGGATGCTGAAATTTCACAA
GGTGGGCTCAACCTTTCTGGTGGTCAAAAACAACGCCTTGCAATTGCGCGTGCCTTAGCACGTCGACCAGAGATTCTGGT
ATTTGATGATAGTTTCTCAGCACTGGATTATAAGACTGACCGTGTTTTACGTGATACCTTGAACCGCGAAACTGCAGAGA
CGACAAAATTAATTGTCGCACAGCGTATTGGGACGATTATTGATGCAGATCAAATTATTGTGTTGGACAAAGGGAAAGTA
GTTGGTCATGGGACACACACTGAACTTTTAGCAAGCAATCCAGTCTATCAAGAAATTGCTTATTCACAACTATCTAAGGA
GGAGTTAGCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(362-511)

ABC transporter transmembrane region (ABC_membrane)

(18-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.5

100

0.575

Multiple sequence alignment