Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   CDH88_RS07130 Genome accession   NZ_CP021840
Coordinates   1405336..1405926 (-) Length   196 a.a.
NCBI ID   WP_044722518.1    Uniprot ID   -
Organism   Escherichia coli strain EC974     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1400336..1410926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH88_RS07115 (CDH88_07110) uhpT 1400976..1402367 (-) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -
  CDH88_RS07120 (CDH88_07115) uhpC 1402505..1403824 (-) 1320 WP_001358267.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  CDH88_RS07125 (CDH88_07120) uhpB 1403834..1405336 (-) 1503 WP_001362490.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  CDH88_RS07130 (CDH88_07125) letA 1405336..1405926 (-) 591 WP_044722518.1 transcriptional regulator UhpA Regulator
  CDH88_RS07135 (CDH88_07130) - 1406088..1407191 (-) 1104 WP_024184356.1 hypothetical protein -
  CDH88_RS28080 - 1407801..1408283 (-) 483 WP_122986826.1 hypothetical protein -
  CDH88_RS07145 (CDH88_07140) ilvN 1409358..1409648 (-) 291 WP_001181706.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20903.33 Da        Isoelectric Point: 5.9999

>NTDB_id=196589 CDH88_RS07130 WP_044722518.1 1405336..1405926(-) (letA) [Escherichia coli strain EC974]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQEPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=196589 CDH88_RS07130 WP_044722518.1 1405336..1405926(-) (letA) [Escherichia coli strain EC974]
ATGATCACCGTTGCCCTTATAGACGATCACCTTATCGTCCGCTCCGGCTTTGCGCAGTTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGTGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGTTGCTAAGCCAGCTGCCGAAAGGTATGGCGACAATTATGCTCTCCGTT
CACGACAGTCCTGCGTTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGCTTTCTCTCCAAACGTTGTAGCCCTGACGA
ACTGATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGAACCGCTAACCAAACGCGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAACCTGATGGAAAAACTGGGTGTCAGTAACGACGTTGA
ACTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(137-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

39

100

0.398
  letA Legionella pneumophila strain ERS1305867

39

100

0.398
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378

Multiple sequence alignment