Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BHS01_RS09505 Genome accession   NZ_CP017195
Coordinates   1945174..1947039 (-) Length   621 a.a.
NCBI ID   WP_109835333.1    Uniprot ID   -
Organism   Lactococcus paracarnosus strain TMW 2.1615     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1940174..1952039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS01_RS09485 (BHS01_09490) mgtA 1940373..1942946 (-) 2574 WP_109835329.1 magnesium-translocating P-type ATPase -
  BHS01_RS09490 (BHS01_09495) - 1943539..1943838 (-) 300 WP_109835330.1 bacteriocin immunity protein -
  BHS01_RS09495 (BHS01_09500) - 1943900..1944244 (-) 345 WP_109835331.1 winged helix-turn-helix transcriptional regulator -
  BHS01_RS09500 (BHS01_09505) - 1944354..1945091 (+) 738 WP_188347991.1 NADPH-dependent oxidoreductase -
  BHS01_RS09505 (BHS01_09510) rcrQ 1945174..1947039 (-) 1866 WP_109835333.1 ABC transporter ATP-binding protein Regulator
  BHS01_RS09510 (BHS01_09515) rcrP 1947039..1948811 (-) 1773 WP_079507397.1 ABC transporter ATP-binding protein Regulator
  BHS01_RS09515 (BHS01_09520) - 1948804..1949280 (-) 477 WP_162542461.1 MarR family winged helix-turn-helix transcriptional regulator -
  BHS01_RS09520 (BHS01_09525) - 1949442..1950374 (+) 933 WP_109835335.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 621 a.a.        Molecular weight: 67761.89 Da        Isoelectric Point: 5.5527

>NTDB_id=196588 BHS01_RS09505 WP_109835333.1 1945174..1947039(-) (rcrQ) [Lactococcus paracarnosus strain TMW 2.1615]
MSTETQTSRRPAGRGFGPGRGLGRGGEKPKNIKKALSDLLKYVKPWYGGIFVAAIAACGGAYLTIIGPDRLSEITNKIIS
GLQASFIPKGYPGHGDIDLDKIMSIGMLLIAFYAGSAILSYSQGFIMATVTQRASKKLRQDISTKINKLPLRYFDGHPYG
DTLSRVTNDVDAISQALNQSVGSLVSALTLFFGSIIMMFKTNIQMSLTAIATTAIGFGLMMLIMSKSQKFFNAQQSGLGE
VNGFVEEIYSGHNMVKVSNADKEKQDEFDAINERLYNSVWKSQFLSGLMMPIMQFIGNFGYAAVCLVGAVLAIDGKIEFG
VIVAFMIYIRLFTQPLTQIAQAVTSLQSAGAASERIFAFLAEDELADETGKATTLPNPKGAVEFQNVHFGYNEDRVIIND
FSAKAEPGQKIAIVGPTGAGKSTMVNLLMRFYDTTSGQIIIDGTPIKEITREAVHDQFSMVLQDTWLFEGTVKENLIYNQ
ANISDQQVVDAAKAVGIDHFINTLPSGYDSMLKDADELSVGERQLLTIARALLKDAPMLILDEATSSVDTRTEELIQKAM
DKLMEGRTSFVIAHRLSTIKNADLILVMKDGDIIESGDHKALLAQDGFYADLYNSQFERVA

Nucleotide


Download         Length: 1866 bp        

>NTDB_id=196588 BHS01_RS09505 WP_109835333.1 1945174..1947039(-) (rcrQ) [Lactococcus paracarnosus strain TMW 2.1615]
ATGAGTACTGAAACACAGACGTCTAGACGGCCTGCGGGTCGTGGATTTGGTCCCGGACGCGGTCTTGGTCGCGGTGGCGA
AAAACCTAAGAATATCAAAAAAGCATTATCTGATTTATTGAAATATGTTAAGCCATGGTATGGTGGTATTTTTGTTGCGG
CGATTGCAGCATGTGGTGGTGCTTATCTGACCATCATAGGTCCAGATAGATTGTCAGAAATAACAAATAAAATCATCAGT
GGCTTACAAGCCAGTTTTATTCCTAAAGGCTATCCAGGTCATGGCGATATCGATTTGGATAAAATCATGTCGATTGGGAT
GTTACTGATTGCCTTTTATGCCGGATCTGCTATTTTGAGTTATAGTCAAGGCTTCATCATGGCAACAGTCACACAGCGTG
CCTCTAAGAAATTACGCCAAGATATTTCGACAAAAATTAACAAACTACCGCTACGTTATTTTGATGGTCATCCTTATGGG
GATACCTTATCACGTGTGACCAACGATGTCGATGCCATTAGCCAAGCGCTTAACCAATCAGTTGGTAGTTTAGTATCAGC
GCTCACCCTATTCTTTGGCTCAATCATCATGATGTTTAAAACAAATATCCAGATGAGCTTGACCGCCATCGCAACAACAG
CCATTGGGTTTGGTCTCATGATGTTGATTATGAGTAAATCTCAAAAGTTCTTTAATGCCCAACAAAGTGGGCTGGGAGAA
GTCAATGGCTTTGTTGAGGAAATTTACTCAGGCCATAACATGGTCAAGGTATCAAATGCTGACAAAGAAAAACAAGATGA
ATTTGATGCCATTAATGAACGCTTATACAACTCTGTTTGGAAATCACAGTTTCTATCAGGTTTGATGATGCCAATCATGC
AATTTATCGGTAACTTTGGCTATGCTGCGGTCTGTTTAGTGGGTGCTGTATTAGCAATTGATGGTAAAATCGAATTTGGT
GTTATCGTTGCCTTCATGATTTATATTCGTCTCTTCACACAACCCCTTACGCAAATTGCCCAAGCAGTGACGTCTTTGCA
ATCAGCAGGTGCAGCATCTGAGCGGATTTTTGCCTTTTTAGCTGAAGATGAACTAGCCGATGAAACAGGTAAAGCAACAA
CATTACCTAATCCCAAGGGTGCTGTCGAATTTCAAAATGTACACTTTGGCTATAATGAAGACCGCGTTATCATTAACGAC
TTCTCAGCCAAGGCAGAACCAGGTCAAAAGATCGCTATCGTAGGCCCTACTGGTGCTGGTAAGTCTACAATGGTTAACCT
GCTCATGAGATTCTATGACACGACTTCTGGGCAAATCATCATTGACGGTACGCCAATTAAAGAGATTACGCGTGAAGCTG
TTCATGATCAATTTTCGATGGTCTTACAAGATACTTGGTTATTTGAAGGCACTGTCAAAGAGAATTTGATCTACAATCAA
GCAAATATTAGTGATCAACAAGTCGTTGATGCTGCTAAAGCAGTTGGTATTGATCACTTCATCAATACCCTACCAAGCGG
CTATGATTCCATGCTGAAAGATGCTGATGAGTTATCTGTTGGGGAACGTCAACTCTTAACGATTGCGCGTGCCCTCTTAA
AAGATGCACCGATGTTAATTCTGGATGAAGCGACTTCTTCAGTGGATACGCGGACAGAAGAGCTCATTCAAAAAGCAATG
GATAAGTTAATGGAAGGTCGAACAAGTTTTGTTATCGCCCATAGACTGTCTACCATCAAGAATGCCGATTTAATTTTGGT
CATGAAAGATGGGGATATCATCGAAAGTGGTGACCATAAAGCATTGCTTGCCCAAGATGGTTTTTACGCTGATTTGTATA
ATTCACAATTTGAGCGTGTTGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(399-546)

ABC transporter transmembrane region (ABC_membrane)

(85-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

59.492

95.008

0.565

Multiple sequence alignment