Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BHS01_RS07505 Genome accession   NZ_CP017195
Coordinates   1521153..1522955 (-) Length   600 a.a.
NCBI ID   WP_109834216.1    Uniprot ID   A0A7L4WDF1
Organism   Lactococcus paracarnosus strain TMW 2.1615     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1516153..1527955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS01_RS07490 (BHS01_07490) - 1518692..1519189 (-) 498 WP_109835513.1 LURP-one-related/scramblase family protein -
  BHS01_RS07495 (BHS01_07495) - 1519402..1520310 (-) 909 WP_109834218.1 peptidyl-prolyl cis-trans isomerase -
  BHS01_RS07500 (BHS01_07500) - 1520412..1521152 (-) 741 WP_109834217.1 O-methyltransferase -
  BHS01_RS07505 (BHS01_07505) pepF 1521153..1522955 (-) 1803 WP_109834216.1 oligoendopeptidase F Regulator
  BHS01_RS07510 (BHS01_07510) - 1523058..1524041 (-) 984 WP_109834215.1 competence protein CoiA -
  BHS01_RS07515 (BHS01_07515) - 1524142..1525113 (-) 972 WP_109834214.1 Gfo/Idh/MocA family protein -
  BHS01_RS07520 (BHS01_07520) - 1525220..1526890 (-) 1671 WP_109834213.1 formate--tetrahydrofolate ligase -
  BHS01_RS07525 (BHS01_07525) - 1527147..1527407 (-) 261 WP_109834212.1 SemiSWEET family transporter -
  BHS01_RS07530 (BHS01_07530) - 1527555..1527881 (-) 327 WP_047915200.1 thioredoxin fold domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68453.77 Da        Isoelectric Point: 4.5656

>NTDB_id=196577 BHS01_RS07505 WP_109834216.1 1521153..1522955(-) (pepF) [Lactococcus paracarnosus strain TMW 2.1615]
MVKKRDEISDAYKWDLTTIFETDSLFEAELTRVLSEIDDVPKLSGTLIDSAETLLTITELELALMQRVEKLYVYASMKND
QDTTVSLYQEYQAKVTGLYAKFSEAFAFYEPEFMSLSQEQFAQFNIDKPKLQAYGHFFAQLFEKKQHVLSSAEEVILAGI
SEVFGAGAETFEVLDNTDIVFPMVQDDTGQEIQLSHGNYISLMESPKREVRQAAYEALYSVYAQYQHTYAKTLQTNVKAQ
NFTAKTRHYASARQAAMSSHHIPEAVYDTLVDTVNAHLPLLHRYIKLRQDVLGIDDLKMYDVYAPLSKTDYKFTYEAAVI
KTQDTLAILGQDYLDKVKRSFKENWIDVQENKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHEMGHSMHSSFTRES
QPYVYGDYSIFLAEIASTTNENILTETLLNEVTDVQTRFAILNHFLDGFRGTVFRQTQFAEFEHAIHEADAAGTVLTSAY
LNTLYAELNEKYYGLSAQENPEIQYEWARIPHFYYNYYVFQYATGFAAASALADKIITGSEQDRADYLDYLRAGASDYPL
AVIAKAGVDMTSSDYLTDAFKVFEKRLIELETIVKKGEQI

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=196577 BHS01_RS07505 WP_109834216.1 1521153..1522955(-) (pepF) [Lactococcus paracarnosus strain TMW 2.1615]
ATGGTAAAAAAACGTGATGAGATATCAGATGCCTATAAATGGGATTTAACGACAATTTTTGAGACCGATAGCTTATTTGA
AGCAGAACTTACGCGTGTGTTAAGTGAAATAGATGACGTGCCTAAATTATCTGGGACATTGATCGATTCTGCTGAGACTT
TGCTTACGATTACTGAGTTAGAATTAGCTTTGATGCAACGTGTTGAAAAACTTTATGTGTATGCGTCTATGAAAAATGAT
CAAGACACGACCGTCAGTCTTTATCAGGAATACCAAGCCAAGGTAACAGGATTATATGCAAAATTCAGTGAAGCATTTGC
ATTTTACGAACCAGAATTTATGAGTCTATCCCAAGAACAGTTTGCCCAATTTAATATTGATAAACCAAAACTGCAGGCTT
ATGGACATTTTTTTGCTCAGCTATTTGAAAAAAAACAGCATGTCTTATCCAGTGCAGAAGAAGTTATTTTAGCAGGGATT
TCAGAAGTATTTGGTGCAGGTGCTGAGACTTTTGAAGTCTTGGATAACACAGATATTGTATTTCCGATGGTCCAAGATGA
CACAGGACAGGAAATACAGTTATCACATGGCAACTATATATCGCTAATGGAATCACCTAAGCGTGAGGTGAGACAGGCAG
CCTATGAAGCGCTATACAGTGTTTACGCCCAATATCAGCATACTTATGCAAAGACCCTACAAACGAATGTAAAAGCACAA
AATTTCACTGCTAAGACACGGCATTATGCCTCTGCTCGTCAAGCTGCCATGTCTAGTCATCATATTCCAGAAGCTGTCTA
CGATACCTTGGTTGATACCGTAAATGCCCATCTGCCTTTATTACATCGCTATATCAAATTACGTCAGGACGTGCTTGGTA
TTGATGATCTTAAAATGTATGATGTGTATGCCCCATTGTCCAAAACGGATTATAAGTTTACCTATGAAGCAGCGGTGATC
AAGACACAGGACACACTAGCTATTTTGGGACAAGACTATCTGGATAAGGTCAAACGTAGTTTCAAAGAAAACTGGATTGA
TGTACAAGAAAACAAAGGGAAACGATCAGGTGCCTACTCAGGTGGGTCTTATGATACAAATGCCTTTATGTTACTTAACT
GGCAGGATACACTAGATAATCTATTTACACTCGTCCATGAGATGGGGCATAGTATGCATAGTAGTTTCACACGTGAAAGT
CAGCCTTATGTGTACGGAGACTACAGTATTTTCCTTGCGGAAATTGCGTCGACGACAAACGAAAACATCTTGACCGAGAC
CTTACTAAATGAAGTGACGGATGTGCAAACCAGATTTGCAATTCTCAACCATTTTTTGGATGGGTTTAGAGGAACCGTCT
TTAGACAAACACAGTTTGCGGAGTTTGAACATGCAATCCATGAGGCTGATGCAGCAGGCACAGTACTCACAAGTGCCTAT
TTAAATACTTTATATGCTGAGCTAAATGAAAAGTATTATGGTCTTTCTGCACAAGAAAATCCAGAAATCCAGTACGAATG
GGCGAGAATACCTCATTTTTACTATAATTACTATGTTTTCCAATATGCCACAGGATTTGCGGCAGCATCTGCATTAGCAG
ATAAAATAATAACTGGTAGTGAGCAAGATAGAGCCGATTACTTGGATTACCTGCGTGCCGGTGCTTCAGACTATCCTTTA
GCAGTGATTGCTAAAGCAGGCGTTGATATGACCTCATCAGACTATTTGACTGATGCCTTTAAGGTGTTTGAAAAACGCTT
GATTGAACTAGAAACGATTGTCAAAAAAGGTGAACAAATTTAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L4WDF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

62.982

99.5

0.627

Multiple sequence alignment