Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CDH88_RS03060 Genome accession   NZ_CP021840
Coordinates   589377..589853 (+) Length   158 a.a.
NCBI ID   WP_001186747.1    Uniprot ID   -
Organism   Escherichia coli strain EC974     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 584377..594853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH88_RS03040 (CDH88_03035) - 584810..587656 (+) 2847 WP_088172201.1 Ag43/Cah family autotransporter adhesin -
  CDH88_RS03050 (CDH88_03045) - 587983..588801 (+) 819 WP_053287565.1 DUF932 domain-containing protein -
  CDH88_RS03055 (CDH88_03050) - 588883..589362 (+) 480 WP_053287564.1 antirestriction protein -
  CDH88_RS03060 (CDH88_03055) radC 589377..589853 (+) 477 WP_001186747.1 RadC family protein Machinery gene
  CDH88_RS03065 (CDH88_03060) - 589922..590143 (+) 222 WP_000692312.1 DUF987 domain-containing protein -
  CDH88_RS03070 (CDH88_03065) - 590223..590591 (+) 369 WP_053287563.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CDH88_RS03075 (CDH88_03070) cbtA 590681..591058 (+) 378 WP_000854821.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CDH88_RS28045 - 591055..591252 (+) 198 Protein_576 DUF5983 family protein -
  CDH88_RS03080 (CDH88_03075) - 591280..591477 (+) 198 WP_023563519.1 DUF957 domain-containing protein -
  CDH88_RS03085 (CDH88_03080) - 591562..592404 (+) 843 Protein_578 DUF4942 domain-containing protein -
  CDH88_RS03090 (CDH88_03085) - 592698..593965 (+) 1268 Protein_579 integrase arm-type DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17642.22 Da        Isoelectric Point: 6.9859

>NTDB_id=196570 CDH88_RS03060 WP_001186747.1 589377..589853(+) (radC) [Escherichia coli strain EC974]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=196570 CDH88_RS03060 WP_001186747.1 589377..589853(+) (radC) [Escherichia coli strain EC974]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAGTGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCGGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392