Detailed information NTG0196566

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CDH88_RS01585
• Genome accession: NZ_CP021840
• Coordinates: 288737..289729 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC974
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 283737..294729

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDH88_RS01560 (CDH88_01560)	pphB	285100..285756 (+)	657	WP_021577846.1	protein-serine/threonine phosphatase	-
CDH88_RS01565 (CDH88_01565)	-	285797..286033 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CDH88_RS01570 (CDH88_01570)	-	286044..287470 (-)	1427	Protein_292	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CDH88_RS01575 (CDH88_01575)	-	287470..288063 (-)	594	WP_021577849.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CDH88_RS01580 (CDH88_01580)	-	288210..288617 (+)	408	WP_021577850.1	MarR family transcriptional regulator	-
CDH88_RS01585 (CDH88_01585)	rpoS	288737..289729 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CDH88_RS01590 (CDH88_01590)	nlpD	289792..290886 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CDH88_RS01595 (CDH88_01595)	pcm	291071..291697 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CDH88_RS01600 (CDH88_01600)	surE	291691..292452 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CDH88_RS01605 (CDH88_01605)	truD	292433..293482 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
CDH88_RS01610 (CDH88_01610)	ispF	293479..293958 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CDH88_RS01615 (CDH88_01615)	ispD	293958..294668 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=196566 CDH88_RS01585 WP_000081550.1 288737..289729(-) (rpoS) [Escherichia coli strain EC974]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=196566 CDH88_RS01585 WP_000081550.1 288737..289729(-) (rpoS) [Escherichia coli strain EC974]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTAATTCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715