Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BHS00_RS06945 Genome accession   NZ_CP017194
Coordinates   1439738..1441540 (-) Length   600 a.a.
NCBI ID   WP_079505533.1    Uniprot ID   -
Organism   Lactococcus carnosus strain TMW 2.1612     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1434738..1446540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS00_RS06930 (BHS00_06895) - 1437278..1437775 (-) 498 WP_079505540.1 LURP-one-related/scramblase family protein -
  BHS00_RS06935 (BHS00_06900) - 1437987..1438895 (-) 909 WP_079505538.1 peptidyl-prolyl cis-trans isomerase -
  BHS00_RS06940 (BHS00_06905) - 1438997..1439737 (-) 741 WP_079505535.1 O-methyltransferase -
  BHS00_RS06945 (BHS00_06910) pepF 1439738..1441540 (-) 1803 WP_079505533.1 oligoendopeptidase F Regulator
  BHS00_RS06950 (BHS00_06915) - 1441643..1442626 (-) 984 WP_079505531.1 competence protein CoiA -
  BHS00_RS06955 (BHS00_06920) - 1442727..1443698 (-) 972 WP_079505529.1 Gfo/Idh/MocA family protein -
  BHS00_RS06960 (BHS00_06925) - 1443727..1444077 (-) 351 WP_079505527.1 DUF2834 domain-containing protein -
  BHS00_RS06965 (BHS00_06930) - 1444140..1445810 (-) 1671 WP_079505525.1 formate--tetrahydrofolate ligase -
  BHS00_RS06970 (BHS00_06935) - 1446067..1446327 (-) 261 WP_079505523.1 SemiSWEET family transporter -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68390.70 Da        Isoelectric Point: 4.5398

>NTDB_id=196545 BHS00_RS06945 WP_079505533.1 1439738..1441540(-) (pepF) [Lactococcus carnosus strain TMW 2.1612]
MVKKRDEISDAYKWDLTTIFETDSLFEAELTSVLSEIDDIPKLSGTLIDSAETLLSITELELALMQRVEKLYVYASMKND
QDTTVSLYQEYQAKVTGLYAKFSEAFAFYEPEFMSISQEQFAQFNIDKPKLQAYGHFFAQLFEKKQHVLSSAEEVILAGI
SEVFGAGAETFEVLDNTDIVFPTVKDDTGQEIQLSHGNYIALMESPKREVRQAAYEALYSVYAQYQHTYAKTLQTNVKAQ
NFTAKTRHYASARQAAMSNHHIPEAVYDTLVDTVNANLPLLHRYIKLRQELLGIDDLKMYDVYAPLSKTDYKFTYETAVI
KTQDTLAILGQDYLDKVKRSFKENWIDVQENKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHEMGHSMHSSFTRET
QPYVYGDYSIFLAEIASTTNENILTETLLNEVTDVQTRFAILNHFLDGFRGTVFRQTQFAEFEHAIHEADAAGTVLTSAY
LNTLYAELNEKYYGLSAQENPEIQYEWARIPHFYYNYYVFQYATGFAAASALADKIVTGSEQDKADYLDYLRAGASDYPL
AVMAKAGVDMTSSDYLTDAFKVFEKRLIELETIVKKGEQI

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=196545 BHS00_RS06945 WP_079505533.1 1439738..1441540(-) (pepF) [Lactococcus carnosus strain TMW 2.1612]
ATGGTAAAAAAACGTGATGAGATATCAGATGCCTATAAATGGGATTTAACGACAATTTTTGAGACCGATAGCTTATTTGA
AGCAGAACTTACGAGTGTGTTAAGTGAAATAGATGACATTCCTAAATTATCTGGGACATTGATTGATTCTGCTGAGACAT
TGCTTTCAATCACTGAGTTAGAGTTAGCTTTGATGCAACGTGTTGAAAAACTTTATGTGTATGCATCTATGAAAAATGAT
CAAGATACGACCGTCAGTCTTTATCAGGAATACCAAGCCAAGGTAACAGGATTATATGCAAAATTCAGTGAAGCATTTGC
ATTTTACGAACCAGAATTTATGAGTATATCTCAAGAACAGTTTGCCCAGTTTAATATTGATAAACCAAAACTGCAAGCCT
ATGGTCATTTTTTTGCACAGTTATTTGAGAAAAAACAACATGTCTTATCCAGTGCAGAAGAAGTGATTTTAGCAGGGATT
TCAGAAGTATTTGGTGCAGGTGCTGAGACTTTTGAAGTGTTGGATAACACAGATATTGTATTTCCGACGGTCAAAGATGA
TACAGGACAGGAAATACAGTTATCACATGGTAACTATATAGCGCTAATGGAATCACCTAAGCGTGAGGTTAGACAGGCGG
CCTATGAGGCGCTATACAGTGTTTATGCCCAATATCAGCATACTTATGCAAAGACGCTACAAACGAATGTAAAAGCACAA
AATTTCACTGCTAAGACACGGCATTATGCTTCTGCTCGTCAAGCTGCCATGTCTAATCATCATATTCCAGAAGCTGTCTA
CGATACCTTGGTTGATACCGTTAATGCCAACCTGCCTTTATTACATCGCTATATCAAATTGCGTCAGGAGTTGCTTGGCA
TTGATGATCTTAAAATGTATGATGTCTACGCCCCTTTATCAAAAACGGATTATAAGTTTACCTATGAAACAGCGGTGATC
AAGACACAGGATACACTAGCTATTTTGGGACAAGACTATCTGGATAAGGTCAAACGTAGTTTCAAAGAAAACTGGATTGA
TGTACAAGAAAACAAAGGCAAACGATCGGGTGCCTACTCAGGTGGATCTTATGATACAAATGCCTTTATGTTGCTTAACT
GGCAAGATACACTAGATAATCTGTTTACACTCGTCCATGAGATGGGTCATAGTATGCATAGTAGTTTTACACGTGAAACC
CAGCCTTATGTGTATGGAGACTACAGTATTTTCCTTGCAGAAATTGCGTCAACGACAAACGAAAATATCTTGACTGAGAC
CTTACTAAATGAGGTGACGGATGTGCAAACCAGATTTGCAATTCTCAATCATTTTTTGGATGGGTTTAGAGGAACCGTCT
TTAGACAAACACAGTTTGCGGAGTTTGAACATGCAATCCATGAGGCTGATGCAGCAGGCACAGTACTCACAAGTGCCTAT
TTAAATACCTTGTATGCTGAGCTGAATGAAAAGTATTATGGTCTTTCGGCGCAAGAAAACCCGGAAATTCAGTATGAATG
GGCACGAATCCCTCATTTTTACTATAATTACTATGTCTTCCAATATGCCACAGGATTTGCGGCAGCATCTGCACTAGCGG
ATAAAATAGTAACTGGTAGTGAGCAGGACAAGGCCGATTATTTGGATTACCTGCGTGCTGGTGCTTCAGACTATCCCTTG
GCAGTTATGGCTAAAGCAGGTGTTGATATGACATCATCAGACTACTTGACTGATGCCTTTAAGGTGTTTGAAAAACGCCT
GATTGAACTAGAGACGATTGTCAAAAAAGGTGAACAAATTTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

62.982

99.5

0.627

Multiple sequence alignment