Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BHS00_RS02030 Genome accession   NZ_CP017194
Coordinates   403577..404941 (+) Length   454 a.a.
NCBI ID   WP_079507160.1    Uniprot ID   -
Organism   Lactococcus carnosus strain TMW 2.1612     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 398577..409941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS00_RS02010 (BHS00_02000) - 398982..400700 (+) 1719 WP_079507168.1 ABC transporter ATP-binding protein -
  BHS00_RS02015 (BHS00_02005) - 400693..402444 (+) 1752 WP_079507166.1 ABC transporter ATP-binding protein -
  BHS00_RS02020 (BHS00_02010) - 402691..403137 (+) 447 WP_097025172.1 dUTP diphosphatase -
  BHS00_RS02025 (BHS00_02015) - 403088..403567 (+) 480 WP_179610318.1 GNAT family N-acetyltransferase -
  BHS00_RS02030 (BHS00_02020) radA 403577..404941 (+) 1365 WP_079507160.1 DNA repair protein RadA Machinery gene
  BHS00_RS02035 (BHS00_02025) - 405261..406334 (+) 1074 WP_079507158.1 PIN/TRAM domain-containing protein -
  BHS00_RS02040 (BHS00_02030) ispD 406331..407008 (+) 678 WP_079507156.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BHS00_RS02045 (BHS00_02035) ispF 407043..407528 (+) 486 WP_079507154.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  BHS00_RS02050 (BHS00_02040) gltX 407655..409103 (+) 1449 WP_079507152.1 glutamate--tRNA ligase -
  BHS00_RS02055 (BHS00_02045) - 409142..409854 (-) 713 Protein_385 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49387.11 Da        Isoelectric Point: 6.7240

>NTDB_id=196531 BHS00_RS02030 WP_079507160.1 403577..404941(+) (radA) [Lactococcus carnosus strain TMW 2.1612]
MAKIKSKFVCQSCGYQSAKYLGRCPNCGAWSSFVEEVEAKTVKNARVTLTGEKTKPIKLGEVESLDTPRVLTEMGEFNRV
LGGGVVPGSLILIGGDPGIGKSTILLQVSVQLANLGRVLYVSGEESAQQIKMRAERLGDLDSDFYLYAENNMQNIRAEIE
KLQPDFLVIDSIQTVMSPEITGVQGSVSQVREVTAELLQIAKTNNIATFIVGHVTKEGSLAGPRMLEHMVDTVLYFEGER
QHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVTNPSEIFLEERLEGATGSAIVVSMEGTRPILVEIQCLVTPTVFGNAR
RTTSGLDFNRVSLIMAVLEKRANLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIVSSYKEKPTQPDVAFIGEIGLTGEIR
RVNRIESRINEAAKLGFKKIYVPKNALVGLAIPPSIKVVGVTTLAEVLQKVFGA

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=196531 BHS00_RS02030 WP_079507160.1 403577..404941(+) (radA) [Lactococcus carnosus strain TMW 2.1612]
ATGGCTAAAATAAAATCAAAATTCGTCTGTCAGTCATGTGGCTACCAGTCTGCTAAATACTTAGGAAGATGTCCAAACTG
TGGCGCTTGGAGTTCGTTTGTTGAAGAGGTAGAGGCTAAGACAGTCAAAAATGCCCGGGTTACCTTAACTGGCGAGAAAA
CAAAACCCATTAAATTAGGTGAAGTCGAAAGCTTAGATACCCCACGTGTTCTGACGGAGATGGGTGAATTTAATCGCGTT
CTAGGTGGGGGCGTGGTACCTGGTAGCTTAATTCTTATCGGTGGAGATCCAGGAATTGGCAAGTCAACGATTCTCTTACA
AGTTTCAGTTCAACTTGCTAATCTTGGTCGTGTCTTATATGTATCTGGTGAAGAGTCTGCCCAACAAATTAAGATGCGAG
CTGAACGGTTAGGGGATTTAGACTCAGACTTCTATCTATATGCTGAAAACAACATGCAAAATATTCGGGCGGAAATCGAA
AAGTTACAACCTGATTTTCTCGTCATAGACTCAATTCAAACAGTCATGAGTCCTGAAATTACAGGCGTTCAGGGCTCTGT
TAGTCAGGTTCGAGAAGTAACTGCTGAACTGCTTCAGATTGCAAAAACGAATAATATCGCGACCTTTATCGTTGGTCATG
TTACCAAAGAAGGTAGCCTTGCTGGACCTAGAATGCTAGAGCATATGGTAGATACGGTGCTCTATTTTGAAGGGGAACGC
CAGCACACTTTTCGCATTTTGAGAGCTGTAAAAAATCGGTTTGGCTCGACGAATGAGATTGGTATTTTTGAAATGCAGTC
ACAAGGGCTAGTTGAAGTGACAAATCCTAGTGAAATCTTCTTAGAAGAACGTTTGGAAGGTGCAACGGGGTCAGCTATCG
TAGTCTCGATGGAAGGGACACGTCCCATCCTTGTTGAAATCCAGTGTCTGGTTACACCGACAGTTTTTGGCAATGCCAGA
CGAACGACATCAGGTCTCGACTTTAATCGGGTCAGCTTAATCATGGCAGTCCTCGAAAAACGTGCAAACTTGCTACTTCA
AAATCAGGATGCCTATCTCAAGTCAGCTGGGGGGGTTAAATTAGATGAGCCGGCTATTGATTTGGCAGTTGCGGTAGCGA
TTGTCTCAAGTTATAAGGAGAAACCAACACAACCAGATGTTGCTTTCATCGGTGAAATTGGCTTGACAGGAGAAATCAGG
CGCGTGAATCGGATTGAAAGTCGGATTAATGAAGCTGCTAAACTTGGCTTTAAAAAAATCTATGTACCAAAAAATGCATT
AGTGGGCTTGGCTATTCCACCATCGATTAAAGTTGTTGGTGTCACAACCTTAGCTGAAGTTTTGCAAAAAGTTTTTGGTG
CTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(78-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

81.858

99.559

0.815
  radA Streptococcus pneumoniae D39

81.858

99.559

0.815
  radA Streptococcus pneumoniae R6

81.858

99.559

0.815
  radA Streptococcus pneumoniae TIGR4

81.858

99.559

0.815
  radA Streptococcus mitis SK321

81.858

99.559

0.815
  radA Streptococcus mitis NCTC 12261

81.637

99.559

0.813
  radA Bacillus subtilis subsp. subtilis str. 168

63.02

100

0.634

Multiple sequence alignment