Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BHS00_RS01380 Genome accession   NZ_CP017194
Coordinates   273976..275841 (+) Length   621 a.a.
NCBI ID   WP_079507395.1    Uniprot ID   -
Organism   Lactococcus carnosus strain TMW 2.1612     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 268976..280841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS00_RS01365 (BHS00_01360) - 270641..271573 (-) 933 WP_079507401.1 alpha/beta hydrolase -
  BHS00_RS01370 (BHS00_01365) - 271735..272211 (+) 477 WP_179610330.1 MarR family winged helix-turn-helix transcriptional regulator -
  BHS00_RS01375 (BHS00_01370) rcrP 272204..273976 (+) 1773 WP_079507397.1 ABC transporter ATP-binding protein Regulator
  BHS00_RS01380 (BHS00_01375) rcrQ 273976..275841 (+) 1866 WP_079507395.1 ABC transporter ATP-binding protein Regulator
  BHS00_RS01385 (BHS00_01380) - 276478..277071 (+) 594 WP_079507393.1 IS3 family transposase -
  BHS00_RS01390 (BHS00_01385) - 277347..278231 (+) 885 Protein_253 IS3 family transposase -
  BHS00_RS10445 - 278977..279138 (-) 162 WP_191245663.1 hypothetical protein -
  BHS00_RS01395 (BHS00_01390) - 279518..280291 (+) 774 WP_079507387.1 Rgg/GadR/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 621 a.a.        Molecular weight: 67685.77 Da        Isoelectric Point: 5.3951

>NTDB_id=196523 BHS00_RS01380 WP_079507395.1 273976..275841(+) (rcrQ) [Lactococcus carnosus strain TMW 2.1612]
MSTETQTSRRPAGRGFGPGGGLGRGGEKPKNIKKALSDLLKYVKPWYGGIFVAAIAACGGAYLTIIGPDRLSEITNKIIS
GLQASFIPKGYPGHGDIDLDKIMSIGMLLIAFYAGSAILSYSQGFIMATVTQRASKKLRQDISTKINKLPLRYFDGHPYG
DTLSRVTNDVDAISQALNQSVGSLVSALTLFFGSIIMMFKTNIQMSLTAIATTAIGFGLMILIMSKSQKFFNAQQSGLGE
VNGFVEEIYSGHNMVKVSNADKEKQDEFDAINERLYNSVWKSQFLSGLMMPIMQFIGNFGYAAVCLVGAVLAIDGKIEFG
VIVAFMIYIRLFTQPLTQIAQAVTSLQSAGAASERIFAFLAEDELADETGKATTLPNPKGAVEFQNVHFGYNEDRVIIND
FSAKAEPGQKIAIVGPTGAGKSTMVNLLMRFYDTTSGQIIIDGTPIKEITREAVHDQFSMVLQDTWLFEGTVKENLIYNQ
ANISDQQVIDAAKAVGIDHFINTLPNGYDSMLKDADELSVGERQLLTIARALLKDAPMLILDEATSSVDTRTEELIQKAM
DKLMEGRTSFVIAHRLSTIKNADLILVMKDGDIIESGDHKALLAQDGFYADLYNSQFERVA

Nucleotide


Download         Length: 1866 bp        

>NTDB_id=196523 BHS00_RS01380 WP_079507395.1 273976..275841(+) (rcrQ) [Lactococcus carnosus strain TMW 2.1612]
ATGAGTACTGAAACACAGACGTCTAGACGACCTGCGGGTCGTGGATTTGGTCCCGGAGGCGGTCTTGGTCGCGGTGGCGA
AAAACCTAAGAATATCAAAAAAGCATTATCTGATTTATTGAAATATGTTAAGCCATGGTATGGTGGTATTTTTGTTGCGG
CGATTGCAGCATGTGGTGGTGCTTATCTGACCATCATAGGTCCAGATAGATTGTCAGAAATAACAAATAAAATCATCAGT
GGCTTACAAGCCAGCTTTATTCCTAAAGGCTATCCAGGTCATGGTGATATCGACTTGGATAAAATCATGTCGATTGGGAT
GTTACTGATTGCTTTTTATGCCGGATCTGCTATTTTGAGTTATAGTCAAGGCTTCATCATGGCGACAGTCACACAGCGTG
CCTCTAAGAAATTACGGCAAGATATTTCGACAAAAATCAACAAACTACCGCTACGTTATTTTGATGGTCATCCTTATGGG
GATACCTTATCACGTGTGACTAACGATGTTGACGCCATTAGCCAAGCGCTTAACCAATCTGTTGGTAGTTTAGTCTCAGC
CCTCACCCTATTCTTTGGCTCAATCATCATGATGTTTAAAACAAATATCCAAATGAGCTTGACTGCCATCGCAACAACGG
CTATCGGATTTGGCCTCATGATATTAATCATGAGTAAATCTCAAAAATTTTTTAATGCCCAACAAAGTGGGCTGGGAGAA
GTCAATGGCTTTGTTGAGGAAATTTACTCAGGCCATAACATGGTTAAGGTATCAAATGCTGACAAAGAAAAACAAGATGA
ATTTGATGCCATTAATGAACGCTTATACAACTCTGTTTGGAAATCACAGTTTCTATCAGGTTTGATGATGCCGATCATGC
AATTTATCGGTAACTTTGGCTATGCTGCGGTCTGTTTAGTCGGTGCTGTATTAGCAATCGATGGTAAAATCGAATTTGGG
GTTATCGTTGCCTTCATGATTTATATCCGTCTTTTCACACAACCTCTTACGCAAATTGCCCAAGCAGTGACGTCTTTGCA
ATCAGCAGGTGCAGCATCTGAGCGGATTTTTGCCTTTTTAGCAGAAGATGAACTAGCCGATGAAACAGGTAAAGCAACAA
CATTACCTAATCCCAAGGGTGCTGTCGAATTTCAAAATGTACATTTTGGCTATAATGAAGACCGTGTCATCATTAACGAC
TTCTCAGCTAAGGCAGAACCAGGTCAAAAAATTGCTATCGTTGGCCCTACTGGTGCTGGTAAGTCTACCATGGTTAACCT
TCTCATGAGATTCTATGACACGACTTCTGGGCAAATCATCATTGACGGTACGCCAATTAAAGAGATTACGCGTGAAGCTG
TTCATGATCAATTTTCGATGGTCTTACAAGATACTTGGTTATTTGAAGGCACTGTCAAAGAGAATTTGATCTACAATCAA
GCGAATATTAGTGATCAACAAGTCATTGATGCCGCCAAAGCAGTTGGTATTGATCATTTCATCAATACCCTACCAAACGG
CTATGATTCGATGCTGAAAGATGCTGATGAGTTATCTGTTGGGGAACGTCAACTCTTAACGATTGCGCGTGCCCTCTTAA
AAGATGCACCAATGTTAATTTTGGATGAAGCGACTTCTTCAGTGGATACGCGGACAGAAGAGCTCATTCAAAAAGCGATG
GATAAGTTAATGGAAGGTCGAACAAGTTTTGTTATCGCCCATAGACTGTCTACCATCAAGAATGCCGATTTAATTTTGGT
GATGAAAGATGGGGATATCATCGAAAGTGGTGACCATAAAGCCTTGCTTGCCCAAGATGGGTTTTATGCTGATCTATATA
ATTCACAATTTGAGCGTGTTGCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(85-336)

ABC transporter (ABC_tran)

(399-546)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

59.661

95.008

0.567

Multiple sequence alignment