Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BHS00_RS01375 Genome accession   NZ_CP017194
Coordinates   272204..273976 (+) Length   590 a.a.
NCBI ID   WP_079507397.1    Uniprot ID   -
Organism   Lactococcus carnosus strain TMW 2.1612     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 267204..278976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS00_RS01355 (BHS00_01350) - 267805..268740 (+) 936 WP_079507405.1 D-2-hydroxyacid dehydrogenase -
  BHS00_RS01360 (BHS00_01355) lysS 268873..270360 (-) 1488 WP_079507403.1 lysine--tRNA ligase -
  BHS00_RS01365 (BHS00_01360) - 270641..271573 (-) 933 WP_079507401.1 alpha/beta hydrolase -
  BHS00_RS01370 (BHS00_01365) - 271735..272211 (+) 477 WP_179610330.1 MarR family winged helix-turn-helix transcriptional regulator -
  BHS00_RS01375 (BHS00_01370) rcrP 272204..273976 (+) 1773 WP_079507397.1 ABC transporter ATP-binding protein Regulator
  BHS00_RS01380 (BHS00_01375) rcrQ 273976..275841 (+) 1866 WP_079507395.1 ABC transporter ATP-binding protein Regulator
  BHS00_RS01385 (BHS00_01380) - 276478..277071 (+) 594 WP_079507393.1 IS3 family transposase -
  BHS00_RS01390 (BHS00_01385) - 277347..278231 (+) 885 Protein_253 IS3 family transposase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 64751.12 Da        Isoelectric Point: 8.5209

>NTDB_id=196522 BHS00_RS01375 WP_079507397.1 272204..273976(+) (rcrP) [Lactococcus carnosus strain TMW 2.1612]
MFKILKKLTGKELRYVGISLIFIITQVYLDLKLPDYMSKVTKLIQEKGTTVSQIFDQGKWMVLCALGSLAAAIVVGYFAA
RVAAGLSRTLRHDVYHQVSEYSMAEINQFSTASLITRSTNDITQVQMFVAMGLQLIIKAPITAVWAIFKIADKSWEWTTA
LGVAVLFILVAISIIVTLAMPRFKIIQKLTDKLNSVTRENLTGIHVVRAYNAEGYQTEKFERANADITSTNLFIQRVMAF
MMPMMSMVSSGLSVAVYLIGATIIKNAAIGTPGNSPRINLFSDMVVFTSYGMQVVMAFMMLTMIFIMMPRANVSAGRINE
VIDTDSSIKNGTKDGDAATEVGTVEFKNVYFQYADASEHVIEGISFKANKGETVAFIGSTGSGKSTLINLIPRYYDVTAG
QVLVDGVNVKDYTENALHNKMGFIPQKPVMFNGTIRSNLAFGTNAGGDLTDEALMSAVRLAQAEEFVTKNEKGLDAEISQ
GGLNLSGGQKQRLAIARALARRPEILVFDDSFSALDYKTDRVLRDTLNRETAETTKLIVAQRIGTIIDADQIIVLDKGKV
VGHGTHTELLASNPVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=196522 BHS00_RS01375 WP_079507397.1 272204..273976(+) (rcrP) [Lactococcus carnosus strain TMW 2.1612]
ATGTTTAAAATACTGAAAAAGCTCACTGGAAAAGAGCTTCGCTATGTTGGCATTAGCCTTATTTTTATCATCACACAGGT
CTATTTGGACTTGAAATTACCTGATTATATGAGTAAGGTTACAAAATTAATCCAAGAAAAAGGAACGACTGTTTCTCAGA
TTTTTGATCAAGGGAAATGGATGGTGCTGTGTGCTTTAGGCTCGCTTGCAGCAGCAATTGTCGTCGGCTATTTTGCGGCT
CGTGTTGCAGCTGGTCTGTCACGAACGCTTCGTCACGATGTCTACCATCAGGTATCTGAGTACTCGATGGCTGAAATCAA
TCAGTTTTCAACAGCTAGTTTGATAACACGCTCGACAAATGATATTACACAAGTGCAAATGTTTGTTGCCATGGGCTTAC
AGCTGATTATAAAAGCGCCAATTACAGCAGTCTGGGCTATTTTTAAGATTGCAGATAAGTCTTGGGAATGGACGACAGCG
CTAGGTGTTGCGGTGCTATTTATCTTGGTTGCCATTAGTATTATCGTCACCCTTGCCATGCCAAGATTTAAGATTATCCA
AAAGTTAACGGATAAATTGAACTCGGTTACTCGAGAAAATTTGACAGGGATTCATGTTGTACGCGCCTATAATGCAGAAG
GCTATCAAACAGAAAAATTTGAACGTGCGAATGCTGATATCACGTCAACGAATCTATTTATTCAACGTGTCATGGCCTTC
ATGATGCCTATGATGTCGATGGTTTCATCTGGCCTTTCAGTTGCTGTTTATCTGATTGGTGCAACGATCATCAAAAATGC
AGCGATTGGTACACCAGGGAATTCACCACGGATTAATTTATTTTCTGATATGGTCGTCTTTACTTCTTATGGCATGCAAG
TCGTGATGGCCTTCATGATGCTGACGATGATTTTCATCATGATGCCACGTGCTAATGTATCTGCTGGCCGGATTAATGAG
GTGATCGATACAGACTCATCTATCAAAAATGGTACGAAAGATGGAGATGCTGCAACAGAAGTTGGGACAGTTGAGTTTAA
AAACGTCTACTTCCAATATGCGGATGCTTCTGAACATGTCATCGAAGGCATATCTTTTAAGGCAAATAAAGGGGAAACTG
TTGCCTTCATCGGGTCTACTGGGTCTGGTAAATCCACTTTAATTAATCTTATTCCGCGTTACTATGATGTCACAGCAGGT
CAAGTGTTGGTTGATGGTGTCAATGTTAAGGATTATACGGAAAATGCCCTACATAATAAAATGGGCTTTATCCCGCAAAA
ACCAGTCATGTTTAATGGGACGATTCGATCTAACTTGGCCTTTGGGACAAATGCAGGTGGTGACTTAACTGATGAGGCCC
TTATGTCAGCAGTTCGTCTTGCACAAGCAGAAGAATTCGTCACAAAAAATGAAAAAGGCTTAGATGCTGAAATTTCACAA
GGTGGGCTCAACCTTTCTGGTGGTCAAAAACAACGTCTTGCAATTGCGCGCGCGTTAGCACGTCGACCAGAGATTCTGGT
ATTTGATGATAGTTTCTCAGCGCTGGATTATAAGACTGACCGTGTTTTACGTGATACCTTGAACCGCGAAACCGCAGAGA
CGACAAAATTAATTGTCGCACAGCGTATTGGGACGATTATTGATGCAGATCAAATTATTGTGTTGGACAAAGGGAAAGTA
GTTGGTCATGGGACACACACTGAACTTTTAGCAAGCAATCCAGTCTATCAAGAAATTGCTTATTCACAACTATCTAAGGA
GGAGTTAGCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(362-511)

ABC transporter transmembrane region (ABC_membrane)

(18-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.5

100

0.575

Multiple sequence alignment