Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CDL16_RS15380 Genome accession   NZ_CP021775
Coordinates   3102123..3102629 (-) Length   168 a.a.
NCBI ID   WP_003139036.1    Uniprot ID   A0A0H2ZBX5
Organism   Pseudomonas aeruginosa strain Pa58     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3097123..3107629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDL16_RS15350 (CDL16_15350) - 3097190..3098014 (-) 825 WP_003139033.1 DUF932 domain-containing protein -
  CDL16_RS15355 (CDL16_15355) - 3098733..3099011 (-) 279 WP_003139034.1 hypothetical protein -
  CDL16_RS15360 (CDL16_15360) - 3099077..3099427 (-) 351 WP_016254207.1 DUF2958 domain-containing protein -
  CDL16_RS15365 (CDL16_15365) - 3099741..3101051 (-) 1311 WP_003139161.1 MFS transporter -
  CDL16_RS15370 (CDL16_15370) - 3101061..3101318 (-) 258 WP_025297819.1 metal-sensing transcriptional repressor -
  CDL16_RS15375 (CDL16_15375) - 3101454..3101846 (-) 393 WP_003139163.1 hypothetical protein -
  CDL16_RS15380 (CDL16_15380) radC 3102123..3102629 (-) 507 WP_003139036.1 RadC family protein Machinery gene
  CDL16_RS15390 (CDL16_15390) - 3102956..3104119 (-) 1164 WP_003139037.1 PDDEXK nuclease domain-containing protein -
  CDL16_RS15395 (CDL16_15395) - 3104116..3105321 (-) 1206 WP_003139038.1 tyrosine-type recombinase/integrase -
  CDL16_RS15400 (CDL16_15400) lecA 3105969..3106337 (+) 369 WP_003090046.1 PA-I galactophilic lectin -
  CDL16_RS15405 (CDL16_15405) - 3106611..3106952 (+) 342 WP_003120049.1 hypothetical protein -
  CDL16_RS15410 (CDL16_15410) - 3107088..3107495 (+) 408 WP_003108811.1 hypothetical protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18485.13 Da        Isoelectric Point: 7.1300

>NTDB_id=196418 CDL16_RS15380 WP_003139036.1 3102123..3102629(-) (radC) [Pseudomonas aeruginosa strain Pa58]
MSQLSLSLDTPLMVRDGRGRYRPADADQILEAARQVIDQKMQRGASFSSPAAVKDYLRAKLAGFEHEVFAVLFLDTRHRL
IDYVEMFHGTIDAAEVHPREVVKQALRLNAAAVIVSHNHPSGNPEPSAADRAMTAQLRQALALVDVRTLDHIIVAGTRTT
SFAECGLI

Nucleotide


Download         Length: 507 bp        

>NTDB_id=196418 CDL16_RS15380 WP_003139036.1 3102123..3102629(-) (radC) [Pseudomonas aeruginosa strain Pa58]
ATGTCGCAACTCTCCCTCTCTCTCGATACCCCGTTGATGGTGCGCGATGGCCGTGGGCGCTATCGGCCGGCGGATGCCGA
CCAGATTCTGGAAGCTGCGCGCCAGGTCATCGACCAGAAGATGCAGCGCGGTGCATCGTTCAGTTCGCCAGCGGCGGTCA
AGGACTACCTGCGCGCCAAGCTGGCTGGCTTCGAGCACGAAGTCTTTGCCGTCCTGTTTCTCGATACGCGCCATCGGCTG
ATCGACTACGTGGAGATGTTTCACGGCACGATCGACGCCGCCGAGGTGCATCCGCGCGAGGTGGTGAAGCAGGCGCTGCG
GCTCAATGCGGCGGCGGTCATCGTTTCGCACAACCATCCGAGTGGGAACCCCGAGCCGAGCGCGGCCGACAGAGCGATGA
CCGCGCAGCTTCGGCAGGCGCTGGCGCTGGTGGACGTTCGCACGCTGGATCACATCATCGTTGCGGGGACTCGCACCACG
TCATTCGCCGAGTGCGGCCTGATTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(47-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

42.105

90.476

0.381