Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CDL16_RS10945 Genome accession   NZ_CP021775
Coordinates   2277458..2277967 (+) Length   169 a.a.
NCBI ID   WP_003092330.1    Uniprot ID   A0ABN4SQN8
Organism   Pseudomonas aeruginosa strain Pa58     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2272458..2282967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDL16_RS10930 (CDL16_10930) pelG 2273230..2274600 (+) 1371 WP_003091283.1 exopolysaccharide Pel transporter PelG -
  CDL16_RS10935 (CDL16_10935) - 2274846..2276045 (+) 1200 WP_001062689.1 tyrosine-type recombinase/integrase -
  CDL16_RS10940 (CDL16_10940) - 2276042..2277106 (+) 1065 WP_003092331.1 PDDEXK nuclease domain-containing protein -
  CDL16_RS10945 (CDL16_10945) radC 2277458..2277967 (+) 510 WP_003092330.1 RadC family protein Machinery gene
  CDL16_RS10950 (CDL16_10950) - 2278034..2280337 (-) 2304 WP_006379607.1 ATP-binding protein -
  CDL16_RS10955 (CDL16_10955) - 2280883..2281710 (+) 828 WP_003092327.1 DUF932 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18809.45 Da        Isoelectric Point: 6.6978

>NTDB_id=196405 CDL16_RS10945 WP_003092330.1 2277458..2277967(+) (radC) [Pseudomonas aeruginosa strain Pa58]
MSQLSFPSFDSCLLVRDAHGRYLPASADDILEAARQVIDRKMRRGAEFTSPAAVKEYLRTKLASFEHEVFVVLFMDTRHR
LIEYREMFHGTIDGASVYPREVVKEALRLNAAAVVVSHNHPSGNPEPSAADRALTQRLKEALGLVDVRVLDHIIVAGNET
ASFAEHGLI

Nucleotide


Download         Length: 510 bp        

>NTDB_id=196405 CDL16_RS10945 WP_003092330.1 2277458..2277967(+) (radC) [Pseudomonas aeruginosa strain Pa58]
ATGTCGCAACTGTCCTTTCCCTCGTTCGATTCCTGTCTGCTGGTGCGCGACGCGCACGGGCGCTATCTACCGGCATCGGC
CGACGACATTCTGGAAGCTGCGCGCCAGGTCATTGACCGGAAAATGCGGCGCGGAGCAGAGTTCACTTCGCCGGCGGCGG
TCAAGGAATACTTGCGTACAAAGTTGGCCAGCTTCGAGCATGAGGTGTTCGTAGTGCTGTTCATGGATACGCGCCATCGT
CTGATCGAATACAGGGAGATGTTCCACGGCACTATTGACGGTGCGTCGGTGTATCCGCGCGAAGTGGTCAAGGAGGCGCT
GCGGCTCAATGCGGCGGCGGTCGTCGTTTCGCACAACCATCCGAGCGGAAACCCCGAGCCGAGCGCGGCTGACCGGGCGC
TGACCCAGCGGCTCAAGGAAGCGTTGGGTCTGGTGGACGTGCGCGTGCTCGATCACATCATCGTTGCGGGCAACGAAACG
GCATCGTTCGCCGAGCATGGGCTGATCTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45

82.84

0.373