Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   CDL16_RS10480 Genome accession   NZ_CP021775
Coordinates   2171187..2171516 (+) Length   109 a.a.
NCBI ID   WP_003130535.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Pa58     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2166187..2176516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDL16_RS10465 (CDL16_10465) - 2166916..2167860 (+) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -
  CDL16_RS10470 (CDL16_10470) - 2167961..2168986 (+) 1026 WP_023093916.1 MraY family glycosyltransferase -
  CDL16_RS10475 (CDL16_10475) - 2168999..2170996 (+) 1998 WP_021265047.1 polysaccharide biosynthesis protein -
  CDL16_RS10480 (CDL16_10480) comEA/comE1 2171187..2171516 (+) 330 WP_003130535.1 ComEA family DNA-binding protein Machinery gene
  CDL16_RS10490 (CDL16_10490) - 2171733..2172929 (-) 1197 WP_003130537.1 amino acid aminotransferase -
  CDL16_RS10495 (CDL16_10495) uvrB 2173117..2175129 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11411.32 Da        Isoelectric Point: 7.1656

>NTDB_id=196400 CDL16_RS10480 WP_003130535.1 2171187..2171516(+) (comEA/comE1) [Pseudomonas aeruginosa strain Pa58]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEADLIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=196400 CDL16_RS10480 WP_003130535.1 2171187..2171516(+) (comEA/comE1) [Pseudomonas aeruginosa strain Pa58]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGACCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCAGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment