Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   BFV66_RS19725 Genome accession   NZ_CP017180
Coordinates   4104324..4105757 (+) Length   477 a.a.
NCBI ID   WP_003861864.1    Uniprot ID   -
Organism   Enterobacter hormaechei subsp. oharae strain DSM 16687     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4099324..4110757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFV66_RS19695 (BFV66_19695) - 4099891..4100868 (+) 978 WP_047051237.1 calcium/sodium antiporter -
  BFV66_RS19700 (BFV66_19700) kdsD 4100882..4101868 (+) 987 WP_003861853.1 arabinose-5-phosphate isomerase KdsD -
  BFV66_RS19705 (BFV66_19705) kdsC 4101883..4102449 (+) 567 WP_047051238.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  BFV66_RS19710 (BFV66_19710) lptC 4102446..4103021 (+) 576 WP_047051239.1 LPS export ABC transporter periplasmic protein LptC -
  BFV66_RS19715 (BFV66_19715) lptA 4102990..4103544 (+) 555 WP_015571984.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  BFV66_RS19720 (BFV66_19720) lptB 4103551..4104276 (+) 726 WP_003861862.1 LPS export ABC transporter ATP-binding protein -
  BFV66_RS19725 (BFV66_19725) rpoN/rpoN1 4104324..4105757 (+) 1434 WP_003861864.1 RNA polymerase factor sigma-54 Machinery gene
  BFV66_RS19730 (BFV66_19730) hpf 4105780..4106067 (+) 288 WP_003861866.1 ribosome hibernation promoting factor -
  BFV66_RS19735 (BFV66_19735) ptsN 4106150..4106641 (+) 492 WP_003861869.1 PTS IIA-like nitrogen regulatory protein PtsN -
  BFV66_RS19740 (BFV66_19740) rapZ 4106687..4107541 (+) 855 WP_003861870.1 RNase adapter RapZ -
  BFV66_RS19745 (BFV66_19745) npr 4107538..4107810 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  BFV66_RS19750 (BFV66_19750) mtgA 4107850..4108575 (-) 726 WP_047051240.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  BFV66_RS19755 (BFV66_19755) elbB 4108572..4109225 (-) 654 WP_047051241.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54099.96 Da        Isoelectric Point: 4.3358

>NTDB_id=196391 BFV66_RS19725 WP_003861864.1 4104324..4105757(+) (rpoN/rpoN1) [Enterobacter hormaechei subsp. oharae strain DSM 16687]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDAQQTQDTETLDSVDALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDE
ILESIGDDEIELEEIEAVLKRVQRFDPIGVAAKDLRDCLLIQLSQFAKETPWIDEARLIISDHLDLLANHDFRTLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNGRWVVELNADSIPRLQINQQYASMCTSARNDADNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEFMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=196391 BFV66_RS19725 WP_003861864.1 4104324..4105757(+) (rpoN/rpoN1) [Enterobacter hormaechei subsp. oharae strain DSM 16687]
ATGAAGCAAGGTTTGCAATTACGGCTCAGCCAGCAACTGGCCATGACGCCGCAGCTACAGCAGGCAATCCGTCTGTTGCA
GCTGTCCACGTTAGAACTCCAGCAGGAGCTCCAGCAGGCGCTGGACAGTAATCCGCTGCTGGAGCAAACCGATCTTCATG
ACGAGGTAGACGCCCAGCAGACGCAGGACACAGAAACGCTAGACTCCGTAGATGCGCTCGAACAGAAAGAGATGCCGGAC
GAACTGCCGCTGGATGCCAGCTGGGACGAAATCTACACCGCGGGTACCCCTTCCGGGACGCGTGCAGACTACCAGGACGA
TGAACTCCCGGTCTACCAGGGCGAAACCACCCAGTCGCTTCAGGACTACCTGATGTGGCAGGTAGAGCTGACCCCTTTCT
CCGATACCGATCGCGCCATTGCCACCTCGATTGTCGATGCCGTTGACGACACGGGCTATTTGACCGTGACGCTGGACGAG
ATTCTGGAAAGCATCGGCGATGACGAGATTGAACTGGAAGAGATCGAAGCCGTTCTGAAACGCGTTCAGCGTTTCGACCC
AATTGGCGTCGCCGCGAAAGATCTGCGCGACTGCCTTCTGATCCAGCTTTCGCAGTTTGCCAAAGAGACACCGTGGATTG
ACGAAGCCCGGCTCATCATCAGCGATCATCTGGATCTGCTGGCGAATCACGACTTCCGCACCCTGATGCGCGTCACGCGC
CTGAAAGAAGAGGTGCTGAAGGAAGCGGTGAATCTGATCCAGTCCCTCGATCCGCGTCCGGGGCAGTCGATCCAGACCAG
CGAACCGGAATATGTCATTCCTGATGTGCTGGTGAGAAAACACAATGGCCGGTGGGTCGTTGAACTGAACGCCGACAGCA
TTCCTCGCCTGCAAATCAACCAGCAATACGCCTCCATGTGCACCAGCGCACGTAATGACGCTGATAATCAATATATTCGC
AGCAACCTTCAGGAAGCACGCTGGTTGATCAAGAGTCTGGAGAGCCGTAATGACACGCTGCTGCGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGCGAAGAGTTTATGAAACCGATGGTGCTGGCGGACATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGCGTGACCACGCAGAAGTATCTGCACAGCCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCACGTGAACACCGAAGGCGGCGGCGAAGCCTCGTCAACGGCCATTCGCGCACTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTCAGTGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTCGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCTAACCAGCGTAAACAACTGGTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48

Multiple sequence alignment