Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CDL16_RS03520 Genome accession   NZ_CP021775
Coordinates   751949..752458 (+) Length   169 a.a.
NCBI ID   WP_008643200.1    Uniprot ID   A0ABV9GW20
Organism   Pseudomonas aeruginosa strain Pa58     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 746949..757458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDL16_RS03505 (CDL16_03505) trpE 747632..749110 (+) 1479 WP_003129206.1 anthranilate synthase component I -
  CDL16_RS03510 (CDL16_03510) - 749345..750547 (+) 1203 WP_008643195.1 tyrosine-type recombinase/integrase -
  CDL16_RS03515 (CDL16_03515) - 750544..751608 (+) 1065 WP_008643197.1 PDDEXK nuclease domain-containing protein -
  CDL16_RS03520 (CDL16_03520) radC 751949..752458 (+) 510 WP_008643200.1 RadC family protein Machinery gene
  CDL16_RS03525 (CDL16_03525) arsH 752500..753222 (-) 723 WP_008643201.1 arsenical resistance protein ArsH -
  CDL16_RS03530 (CDL16_03530) arsC 753215..753637 (-) 423 WP_020203139.1 arsenate reductase (glutaredoxin) -
  CDL16_RS03535 (CDL16_03535) arsB 753652..754731 (-) 1080 WP_021204056.1 ACR3 family arsenite efflux transporter -
  CDL16_RS03540 (CDL16_03540) arsA 754761..756527 (-) 1767 WP_023124803.1 arsenical pump-driving ATPase -
  CDL16_RS03545 (CDL16_03545) arsD 756541..756900 (-) 360 WP_008643208.1 arsenite efflux transporter metallochaperone ArsD -
  CDL16_RS03550 (CDL16_03550) - 756942..757439 (-) 498 WP_008643209.1 arsenate reductase ArsC -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18535.12 Da        Isoelectric Point: 6.3365

>NTDB_id=196388 CDL16_RS03520 WP_008643200.1 751949..752458(+) (radC) [Pseudomonas aeruginosa strain Pa58]
MSQLSFSSFDASLMVRDAQGRYLLATADQILEAARQAIEYKMQRGASFSSPVAVKEYLSAKLAGFEHEVFAVLFLDTQHR
LIEYSELFRGTIDSASVYPRELVKEALRLNAAAVIVSHNHPSGNPEPSGADKVLTQRLREALALVDVRTLDHIIVAGGST
ISFAERGLI

Nucleotide


Download         Length: 510 bp        

>NTDB_id=196388 CDL16_RS03520 WP_008643200.1 751949..752458(+) (radC) [Pseudomonas aeruginosa strain Pa58]
ATGTCGCAACTGTCCTTTTCCTCGTTCGATGCCTCGCTGATGGTGCGCGATGCACAGGGCCGCTACCTGCTGGCGACGGC
CGACCAAATTCTGGAGGCCGCGCGCCAGGCCATCGAGTACAAGATGCAGCGCGGTGCGTCGTTCAGTTCGCCGGTGGCGG
TCAAGGAGTACCTGAGCGCCAAGTTGGCTGGTTTCGAGCATGAAGTCTTCGCTGTGCTGTTCTTGGATACGCAGCATCGC
CTGATCGAATACAGCGAGCTTTTCCGAGGCACCATCGACAGTGCATCGGTGTATCCACGCGAGCTGGTCAAGGAGGCGCT
GCGGCTCAATGCGGCAGCGGTCATCGTTTCGCACAACCATCCGAGCGGCAACCCCGAACCGAGCGGCGCCGACAAGGTAC
TGACCCAGCGGCTCAGGGAGGCGCTGGCGCTGGTGGATGTCCGCACGCTGGATCACATCATCGTGGCGGGTGGCAGCACC
ATATCCTTCGCCGAACGCGGTCTGATTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

46.429

82.84

0.385