Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CDG41_RS26220 Genome accession   NZ_CP021774
Coordinates   5450784..5452226 (-) Length   480 a.a.
NCBI ID   WP_023096088.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Pa124     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5445784..5457226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG41_RS26190 (CDG41_26185) - 5446110..5447225 (+) 1116 WP_003110035.1 glycosyltransferase family 4 protein -
  CDG41_RS26195 (CDG41_26190) - 5447218..5447979 (+) 762 WP_003093883.1 DUF2334 domain-containing protein -
  CDG41_RS26200 (CDG41_26195) - 5447976..5448977 (+) 1002 WP_003093885.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  CDG41_RS26205 (CDG41_26200) - 5448952..5449164 (-) 213 WP_003093886.1 hypothetical protein -
  CDG41_RS26210 (CDG41_26205) purU 5449214..5450065 (-) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  CDG41_RS26215 (CDG41_26210) mvaT 5450325..5450699 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  CDG41_RS26220 (CDG41_26215) sbcB 5450784..5452226 (-) 1443 WP_023096088.1 exodeoxyribonuclease I Machinery gene
  CDG41_RS26225 (CDG41_26220) - 5452451..5453188 (+) 738 WP_003101171.1 hypothetical protein -
  CDG41_RS26230 (CDG41_26225) - 5453226..5454023 (+) 798 WP_003134638.1 RDD family protein -
  CDG41_RS26235 (CDG41_26230) - 5454020..5455000 (+) 981 WP_003093893.1 stage II sporulation protein M -
  CDG41_RS26240 (CDG41_26235) - 5454987..5456558 (+) 1572 WP_003141220.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55563.85 Da        Isoelectric Point: 5.4194

>NTDB_id=196336 CDG41_RS26220 WP_023096088.1 5450784..5452226(-) (sbcB) [Pseudomonas aeruginosa strain Pa124]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTVLYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVDERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=196336 CDG41_RS26220 WP_023096088.1 5450784..5452226(-) (sbcB) [Pseudomonas aeruginosa strain Pa124]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCTGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGCCAGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGATGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGCCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGTTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGTGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAACAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGTTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGACGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(207-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.882

88.542

0.442