Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BHS08_RS06365 Genome accession   NZ_CP017173
Coordinates   1497878..1499245 (-) Length   455 a.a.
NCBI ID   WP_140797453.1    Uniprot ID   -
Organism   Myxococcus xanthus strain MC3.3.5c16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1492878..1504245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS08_RS06350 (BHS08_06230) - 1492883..1494376 (-) 1494 WP_140797451.1 sensor histidine kinase -
  BHS08_RS06355 (BHS08_06235) - 1494685..1495236 (+) 552 WP_140788166.1 dihydrofolate reductase family protein -
  BHS08_RS06360 (BHS08_06240) - 1495309..1497486 (-) 2178 WP_140797452.1 glycosyl hydrolase family 18 protein -
  BHS08_RS06365 (BHS08_06245) radA 1497878..1499245 (-) 1368 WP_140797453.1 DNA repair protein RadA Machinery gene
  BHS08_RS06370 (BHS08_06250) - 1499429..1499698 (+) 270 WP_020478235.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  BHS08_RS06375 (BHS08_06255) bioB 1499839..1500879 (+) 1041 WP_011551374.1 biotin synthase BioB -
  BHS08_RS06380 (BHS08_06260) bioF 1500886..1502061 (+) 1176 WP_140797454.1 8-amino-7-oxononanoate synthase -
  BHS08_RS06385 (BHS08_06265) bioD 1502054..1502737 (+) 684 WP_140788188.1 dethiobiotin synthase -
  BHS08_RS06390 (BHS08_06270) - 1502870..1503148 (+) 279 WP_140788190.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48314.77 Da        Isoelectric Point: 7.6453

>NTDB_id=196295 BHS08_RS06365 WP_140797453.1 1497878..1499245(-) (radA) [Myxococcus xanthus strain MC3.3.5c16]
MAKAKTHYTCQACGYKTAKWLGKCPDCGAWSSLLEETDPKADERRPAWGASGGAARPMLLKEVSGETETRRRTGIAEFDR
VLGGGVVSGSIVLLGGDPGIGKSTLLLAALDRLARHGPVLYVSGEESLRQTKMRAERLRVEGDAIHLFAETDAERVLTAT
EALKPQALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAYAKRTGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRILRAHKNRFGSTNEIGVFEMKGAGLVEVSDPSALFLSERPVGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLTEPACDLAVCAALVSSLQNRPLDPKTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRVVMPAGSARRLEDAGPKMKIVGVETLGDALVAMFD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=196295 BHS08_RS06365 WP_140797453.1 1497878..1499245(-) (radA) [Myxococcus xanthus strain MC3.3.5c16]
ATGGCGAAGGCGAAGACGCACTACACCTGTCAGGCGTGTGGATACAAAACGGCGAAGTGGCTCGGAAAGTGTCCGGACTG
TGGCGCGTGGAGCTCCCTGCTGGAGGAGACGGACCCGAAGGCAGATGAGCGACGTCCGGCCTGGGGTGCCTCGGGCGGCG
CGGCGCGGCCCATGTTGCTCAAGGAAGTGAGCGGCGAGACGGAGACGCGCCGGCGCACGGGCATCGCCGAATTCGACCGC
GTGCTGGGCGGCGGCGTGGTGAGTGGCTCCATCGTGCTGTTGGGTGGCGACCCGGGCATTGGCAAGTCCACGCTGCTGCT
GGCGGCGTTGGACAGGCTGGCGCGGCACGGACCGGTGCTCTACGTCTCCGGTGAAGAGAGCCTGCGACAGACGAAGATGC
GCGCCGAGCGGCTCCGGGTGGAGGGCGATGCCATCCACCTGTTCGCGGAGACGGACGCGGAGCGGGTGCTGACGGCGACG
GAGGCGTTGAAGCCCCAGGCGCTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGTTGGGCAACGCGCCCGGCAG
CATCACCCAGGTGCGCGAGGTCGCGGGCCGGCTGATGGCCTACGCGAAGCGCACGGGGGTGCCCACGTTCCTGGTGGGCC
ACGTGACGAAGGAAGGCTCTATCGCGGGCCCGCGCGTGCTGGAGCACATGGTGGACACGGTCCTCTACTTCGAGGGCGAG
CGGGGCCATCCGTTCCGAATCCTGCGCGCGCACAAGAACCGCTTCGGCTCCACGAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGGCTGGTGGAGGTGTCCGACCCGTCCGCCCTCTTCCTGTCGGAGCGGCCGGTGGGCAAGTCCGGCAGCGTGG
TGACGAGCACGCTGAACGGCACGCGCCCGCTGTTGGTGGAGGTGCAGGCGCTGGTGGCTCCCACGGGCTACGGCACCGCG
CGGCGCACGGCGATTGGCGTGGACGGCAACCGCGTGGCGCTGCTGGCGGCGGTGCTGGAAAAGAAGGAAGAGATTCCGCT
GGTGGGCTGTGACTTGTTCGTCAACGTGGCGGGCGGCATGCAGCTCACGGAGCCCGCGTGTGACCTAGCGGTGTGCGCGG
CGCTGGTGAGCAGCCTCCAGAATCGTCCGCTGGACCCGAAGACGCTGGTGCTCGGTGAAGTGGGCCTCGCCGGAGAGGTG
CGCGCGGTGGGTCAAGTGGAGCCCCGGCTAGCGGAGGCCGCCAAGATGGGCTTCCAACGTGTGGTGATGCCCGCCGGCAG
TGCGCGGCGGCTCGAAGACGCCGGTCCGAAGATGAAGATCGTCGGCGTGGAGACGCTCGGCGACGCGCTCGTCGCGATGT
TCGACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(351-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

AAA domain (AAA_25)

(81-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.187

100

0.532
  radA Streptococcus mitis SK321

51.974

100

0.521
  radA Streptococcus mitis NCTC 12261

51.868

100

0.519
  radA Streptococcus pneumoniae TIGR4

51.648

100

0.516
  radA Streptococcus pneumoniae Rx1

51.648

100

0.516
  radA Streptococcus pneumoniae D39

51.648

100

0.516
  radA Streptococcus pneumoniae R6

51.648

100

0.516

Multiple sequence alignment