Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CCZ24_RS10530 Genome accession   NZ_CP021773
Coordinates   2048919..2049680 (-) Length   253 a.a.
NCBI ID   WP_001266276.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain B105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2043919..2054680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ24_RS10510 (CCZ24_10370) purC 2045830..2046534 (-) 705 WP_000184490.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  CCZ24_RS10515 (CCZ24_10375) - 2046658..2046897 (-) 240 WP_000085641.1 phosphopantetheine-binding protein -
  CCZ24_RS10520 (CCZ24_10380) plsX 2046908..2047900 (-) 993 WP_000717414.1 phosphate acyltransferase PlsX -
  CCZ24_RS10525 (CCZ24_10385) - 2047978..2048856 (-) 879 WP_000420123.1 type II CAAX endopeptidase family protein -
  CCZ24_RS10530 (CCZ24_10390) recO 2048919..2049680 (-) 762 WP_001266276.1 DNA repair protein RecO Machinery gene
  CCZ24_RS10535 (CCZ24_10395) - 2049670..2050845 (-) 1176 WP_000171461.1 pyridoxal phosphate-dependent aminotransferase -
  CCZ24_RS10540 (CCZ24_10400) - 2050953..2051921 (-) 969 WP_000122450.1 ribose-phosphate diphosphokinase -
  CCZ24_RS10545 (CCZ24_10405) - 2052045..2053364 (-) 1320 WP_112409719.1 CHAP domain-containing protein -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29682.08 Da        Isoelectric Point: 6.1551

>NTDB_id=196265 CCZ24_RS10530 WP_001266276.1 2048919..2049680(-) (recO) [Streptococcus agalactiae strain B105]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
TNSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFYDCVFCHRAGL
PFDFSHKYSGLLCPNHYYKDERRNHLDPNMLYLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=196265 CCZ24_RS10530 WP_001266276.1 2048919..2049680(-) (recO) [Streptococcus agalactiae strain B105]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGACGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGGAAAAGAATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ACCAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGACGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTTTATGATTGTGTTTTTTGTCATAGGGCAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTATTATAAAGACGAGAGAAGAAACCACCTAGA
TCCTAATATGCTGTACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.71

98.024

0.625