Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BHS04_RS06315 Genome accession   NZ_CP017169
Coordinates   1470466..1471833 (-) Length   455 a.a.
NCBI ID   WP_140853226.1    Uniprot ID   -
Organism   Myxococcus xanthus strain GH3.5.6c2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1465466..1476833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHS04_RS06300 (BHS04_06130) - 1465471..1466964 (-) 1494 WP_140797451.1 sensor histidine kinase -
  BHS04_RS06305 (BHS04_06135) - 1467273..1467824 (+) 552 WP_140853224.1 dihydrofolate reductase family protein -
  BHS04_RS06310 (BHS04_06140) - 1467897..1470074 (-) 2178 WP_140853225.1 glycosyl hydrolase family 18 protein -
  BHS04_RS06315 (BHS04_06145) radA 1470466..1471833 (-) 1368 WP_140853226.1 DNA repair protein RadA Machinery gene
  BHS04_RS06320 (BHS04_06150) - 1472017..1472286 (+) 270 WP_020478235.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  BHS04_RS06325 (BHS04_06155) bioB 1472427..1473467 (+) 1041 WP_011551374.1 biotin synthase BioB -
  BHS04_RS06330 (BHS04_06160) bioF 1473475..1474650 (+) 1176 WP_140853227.1 8-amino-7-oxononanoate synthase -
  BHS04_RS06335 (BHS04_06165) bioD 1474643..1475326 (+) 684 WP_140853228.1 dethiobiotin synthase -
  BHS04_RS06340 (BHS04_06170) - 1475459..1475737 (+) 279 WP_140788190.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48344.80 Da        Isoelectric Point: 7.6453

>NTDB_id=196247 BHS04_RS06315 WP_140853226.1 1470466..1471833(-) (radA) [Myxococcus xanthus strain GH3.5.6c2]
MAKAKTHYTCQACGYKTAKWLGKCPDCGAWSSLLEETDPKADERRPAWGASGGAARPMLLKEVSGETETRRRTGIAEFDR
VLGGGVVSGSIVLLGGDPGIGKSTLLLAALDRLARHGPVLYVSGEESLRQTKMRAERLRVEGDAIHLFAETDAERVLTAT
EALKPQALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAYAKRTGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRILRAHKNRFGSTNEIGVFEMKGAGLVEVSDPSALFLSERPVGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDSNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLTEPACDLAVCAALVSSLQNRPLDPKTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRVVMPAGSARRLEDAGPKMKIVGVETLGDALVAMFD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=196247 BHS04_RS06315 WP_140853226.1 1470466..1471833(-) (radA) [Myxococcus xanthus strain GH3.5.6c2]
ATGGCGAAGGCGAAGACGCACTACACCTGTCAGGCGTGTGGATACAAAACGGCGAAGTGGCTCGGGAAGTGTCCGGACTG
TGGCGCGTGGAGTTCCCTGCTGGAGGAGACGGACCCGAAGGCGGATGAGCGACGTCCGGCCTGGGGTGCCTCGGGCGGCG
CGGCGCGGCCCATGCTGCTCAAGGAAGTGAGCGGCGAGACGGAGACGCGCCGGCGCACGGGCATCGCCGAATTCGACCGC
GTACTGGGCGGCGGCGTGGTGAGTGGCTCCATCGTGCTGTTGGGTGGCGACCCGGGCATTGGCAAGTCCACGCTGCTGCT
GGCGGCGTTGGACAGGCTGGCGCGACACGGACCGGTGCTCTACGTCTCCGGTGAAGAGAGCCTGCGACAGACGAAGATGC
GCGCCGAGCGGCTCCGGGTGGAGGGCGATGCCATCCACCTGTTCGCGGAGACGGACGCGGAGCGGGTGCTGACGGCGACG
GAGGCGTTGAAGCCCCAGGCGTTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGTTGGGCAACGCGCCCGGCAG
CATCACCCAGGTGCGCGAGGTCGCGGGCCGGCTGATGGCCTACGCGAAGCGCACGGGGGTGCCCACGTTCCTGGTGGGCC
ACGTGACGAAGGAAGGCTCTATCGCGGGCCCGCGCGTGCTGGAGCACATGGTGGACACGGTCCTCTACTTCGAGGGCGAG
CGGGGCCATCCGTTCCGAATCCTGCGCGCGCACAAGAACCGCTTCGGCTCCACGAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGGCTGGTGGAGGTGTCCGACCCGTCCGCCCTCTTCCTGTCGGAGCGGCCGGTGGGCAAGTCCGGCAGCGTGG
TGACGAGCACGCTGAACGGCACGCGCCCGCTGCTGGTGGAGGTGCAAGCGCTGGTGGCGCCCACGGGCTACGGCACCGCG
CGGCGCACGGCGATTGGCGTGGACAGCAACCGCGTGGCGTTGCTGGCGGCGGTGCTGGAGAAGAAGGAAGAGATTCCGCT
GGTGGGCTGTGACTTGTTCGTCAACGTGGCGGGAGGCATGCAACTCACCGAGCCCGCGTGTGACCTGGCGGTGTGCGCGG
CGCTGGTGAGCAGTCTCCAGAATCGTCCGCTGGATCCGAAGACGCTGGTGCTGGGCGAAGTGGGCCTCGCGGGAGAAGTG
CGCGCGGTGGGACAGGTGGAGCCCCGGCTGGCGGAGGCCGCGAAGATGGGCTTCCAACGCGTGGTGATGCCCGCTGGCAG
CGCGCGGCGCCTGGAGGATGCGGGCCCGAAGATGAAAATCGTCGGCGTGGAGACGCTTGGCGACGCGCTCGTCGCGATGT
TCGACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

Subunit ChlI of Mg-chelatase (ChlI)

(350-425)

AAA domain (AAA_25)

(81-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.187

100

0.532
  radA Streptococcus mitis SK321

51.974

100

0.521
  radA Streptococcus mitis NCTC 12261

51.868

100

0.519
  radA Streptococcus pneumoniae TIGR4

51.648

100

0.516
  radA Streptococcus pneumoniae Rx1

51.648

100

0.516
  radA Streptococcus pneumoniae D39

51.648

100

0.516
  radA Streptococcus pneumoniae R6

51.648

100

0.516

Multiple sequence alignment