Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   CCZ24_RS03225 Genome accession   NZ_CP021773
Coordinates   621612..622052 (+) Length   146 a.a.
NCBI ID   WP_000431168.1    Uniprot ID   R4Z9I5
Organism   Streptococcus agalactiae strain B105     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 616612..627052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ24_RS03205 (CCZ24_03155) - 616728..617237 (-) 510 WP_000870956.1 DUF308 domain-containing protein -
  CCZ24_RS03210 (CCZ24_03160) gdhA 617405..618754 (+) 1350 WP_000200442.1 NADP-specific glutamate dehydrogenase -
  CCZ24_RS03215 (CCZ24_03165) - 618824..619234 (+) 411 WP_000594935.1 peptide deformylase -
  CCZ24_RS03220 (CCZ24_03170) - 619271..621343 (-) 2073 WP_000726928.1 bifunctional metallophosphatase/5'-nucleotidase -
  CCZ24_RS03225 (CCZ24_03175) rcrR 621612..622052 (+) 441 WP_000431168.1 MarR family transcriptional regulator Regulator
  CCZ24_RS03230 (CCZ24_03180) rcrP 622099..623916 (+) 1818 WP_000481812.1 ABC transporter ATP-binding protein Regulator
  CCZ24_RS03235 (CCZ24_03185) rcrQ 623906..625660 (+) 1755 WP_000851088.1 ABC transporter ATP-binding protein Regulator
  CCZ24_RS03240 (CCZ24_03190) - 625768..626394 (+) 627 WP_000449644.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16968.84 Da        Isoelectric Point: 9.8384

>NTDB_id=196196 CCZ24_RS03225 WP_000431168.1 621612..622052(+) (rcrR) [Streptococcus agalactiae strain B105]
MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=196196 CCZ24_RS03225 WP_000431168.1 621612..622052(+) (rcrR) [Streptococcus agalactiae strain B105]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCGTTATGCAAAAGAGTATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACTTAGTGATGCATCTCTATAAACATCCTGACAAGGATATGTCTATAAAAG
ATGCTGAAGAAATTTTACACATTTCTAAGTCTGTAGCGTCTAATTTGGTAAAACGGATGGAAAAAAATGGATTTATTGCG
ATTGTTCCATCTAAGACAGATAAGCGTGTGAAATACCTTTATTTGACTCATCTAGGTAAACAAAAGGCTACACAATTTGA
AATTTTCTTAGAAAAATTGCACAGTACCATGTTAGCAGGTATTACTAAAGAAGAGATACGTACTACCAAAAAGGTTATTA
GAACATTAGCTAAAAATATGGCGATGGAAGATTTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7DVS

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

95.89

0.411