Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   CDH84_RS05125 Genome accession   NZ_CP021771
Coordinates   996350..996832 (-) Length   160 a.a.
NCBI ID   WP_000163512.1    Uniprot ID   Q8DZB3
Organism   Streptococcus agalactiae strain B507     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 991350..1001832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH84_RS05105 (CDH84_05050) alsS 991609..993291 (-) 1683 WP_000140346.1 acetolactate synthase AlsS -
  CDH84_RS05110 (CDH84_05055) - 993401..994627 (-) 1227 WP_000934876.1 hypothetical protein -
  CDH84_RS05115 (CDH84_05060) - 994617..995807 (-) 1191 WP_001081540.1 AI-2E family transporter -
  CDH84_RS05120 (CDH84_05065) - 995899..996360 (-) 462 WP_000796045.1 NUDIX hydrolase -
  CDH84_RS05125 (CDH84_05070) mutX 996350..996832 (-) 483 WP_000163512.1 8-oxo-dGTP diphosphatase Machinery gene
  CDH84_RS05130 (CDH84_05075) hylB 997049..1000267 (+) 3219 WP_112477777.1 hyaluronate lyase -
  CDH84_RS05135 (CDH84_05080) rfbB 1000319..1001365 (-) 1047 WP_000134282.1 dTDP-glucose 4,6-dehydratase -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18837.23 Da        Isoelectric Point: 4.5116

>NTDB_id=196017 CDH84_RS05125 WP_000163512.1 996350..996832(-) (mutX) [Streptococcus agalactiae strain B507]
MTKLATICYIDNGKELLLLHRNKKENDVHEGKWISVGGKLEAGETPDECAKREILEETHLTVKKMDFKGVITFPEFTPGH
DWYTYVFKVTDYEGELISDDESREGTLEWVPYDQVLSKPTWQGDYEIFKWILEDVPFFSAKFVYDEHQNLIEKTVNFYEK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=196017 CDH84_RS05125 WP_000163512.1 996350..996832(-) (mutX) [Streptococcus agalactiae strain B507]
ATGACTAAATTAGCAACAATTTGTTACATTGACAATGGCAAGGAATTACTTCTATTGCACCGCAACAAAAAAGAGAATGA
TGTTCATGAGGGAAAGTGGATCTCGGTAGGCGGTAAACTGGAGGCAGGTGAAACTCCGGATGAATGTGCTAAGCGTGAAA
TTCTAGAAGAAACCCATTTAACAGTAAAAAAAATGGATTTTAAAGGAGTCATCACTTTTCCTGAATTTACGCCAGGTCAT
GATTGGTATACCTATGTCTTTAAAGTAACAGATTATGAAGGAGAGTTAATTTCAGATGATGAATCACGAGAAGGAACCTT
AGAATGGGTACCATATGATCAAGTTCTCTCTAAGCCAACGTGGCAAGGAGATTACGAAATTTTTAAATGGATTTTAGAAG
ATGTTCCTTTCTTTTCTGCTAAGTTTGTTTATGATGAACACCAAAATTTAATTGAAAAGACGGTTAATTTTTATGAAAAA
TAG

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(3-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DZB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

71.698

99.375

0.712