Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   CDH84_RS04020 Genome accession   NZ_CP021771
Coordinates   779246..779914 (+) Length   222 a.a.
NCBI ID   WP_000076874.1    Uniprot ID   X5JZS1
Organism   Streptococcus agalactiae strain B507     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 774246..784914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH84_RS04000 (CDH84_03965) - 774785..775273 (-) 489 WP_001140791.1 PASTA domain-containing protein -
  CDH84_RS04005 (CDH84_03970) - 775439..776401 (+) 963 WP_001253127.1 S41 family peptidase -
  CDH84_RS04010 (CDH84_03975) - 776427..777179 (+) 753 WP_057498854.1 ABC transporter ATP-binding protein -
  CDH84_RS04015 (CDH84_03980) - 777181..779136 (+) 1956 WP_000499553.1 FtsX-like permease family protein -
  CDH84_RS04020 (CDH84_03985) braR 779246..779914 (+) 669 WP_000076874.1 response regulator transcription factor Regulator
  CDH84_RS04025 (CDH84_03990) - 779911..780849 (+) 939 WP_000620981.1 sensor histidine kinase -
  CDH84_RS04030 (CDH84_03995) xerS 780892..781962 (-) 1071 WP_000817930.1 tyrosine recombinase XerS Machinery gene
  CDH84_RS04035 (CDH84_04000) - 782415..783983 (+) 1569 WP_112477769.1 peptide ABC transporter substrate-binding protein -
  CDH84_RS04040 (CDH84_04005) - 784016..784801 (-) 786 WP_041980725.1 DUF3307 domain-containing protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25403.45 Da        Isoelectric Point: 5.0693

>NTDB_id=196007 CDH84_RS04020 WP_000076874.1 779246..779914(+) (braR) [Streptococcus agalactiae strain B507]
MSQEQGKIYIVEDDMTIVSLLKDHLSASYHVSSVSNFRDVKQEIIAFQPDLILMDITLPYFNGFYWTAELRKFLTIPIIF
ISSSNDEMDMVMALNMGGDDFISKPFSLAVLDAKLTAILRRSQQFIQQELTFGGFTLTREGLLSSQDKEVILSPTENKIL
SILLMHPKQVVSKESLLEKLWENDSFIDQNTLNVNMTRLRKKIVPIGFDYIHTVRGVGYLLQ

Nucleotide


Download         Length: 669 bp        

>NTDB_id=196007 CDH84_RS04020 WP_000076874.1 779246..779914(+) (braR) [Streptococcus agalactiae strain B507]
ATGTCACAAGAGCAAGGAAAAATTTATATTGTAGAAGATGATATGACGATTGTGTCACTTTTAAAAGATCATTTATCAGC
TAGCTATCATGTCTCTAGTGTCAGCAATTTTCGTGATGTGAAACAAGAAATTATCGCATTTCAACCCGATTTGATACTAA
TGGATATTACGTTACCCTATTTTAATGGTTTTTACTGGACTGCAGAATTGCGTAAGTTTTTAACAATTCCTATTATTTTC
ATTTCATCTAGTAATGATGAAATGGATATGGTTATGGCATTAAATATGGGGGGTGATGACTTTATTTCAAAACCATTCTC
TCTAGCTGTATTAGATGCTAAGCTAACTGCTATTTTAAGGAGAAGTCAACAATTTATCCAACAGGAATTAACTTTTGGGG
GATTTACGTTGACAAGAGAAGGGTTATTGTCTAGCCAAGATAAAGAGGTTATTTTATCGCCAACAGAAAATAAAATCCTA
TCTATCTTGCTCATGCATCCTAAACAAGTAGTCTCAAAAGAGTCTCTATTAGAGAAACTTTGGGAAAATGATAGTTTTAT
TGATCAAAATACACTTAATGTTAATATGACACGCTTACGTAAAAAAATTGTCCCAATAGGTTTTGATTACATTCATACAG
TGAGAGGAGTTGGGTATTTACTACAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-115)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5DCL
  PDB 5DCM

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.248

98.198

0.464