Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   BFP66_RS03460 Genome accession   NZ_CP017142
Coordinates   678852..679151 (+) Length   99 a.a.
NCBI ID   WP_014637767.1    Uniprot ID   -
Organism   Streptococcus suis strain GZ0565     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 673852..684151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFP66_RS03440 (BFP66_03440) - 674686..675279 (-) 594 WP_024395872.1 DUF1361 domain-containing protein -
  BFP66_RS03445 (BFP66_03445) metG 675435..677438 (+) 2004 WP_024395873.1 methionine--tRNA ligase -
  BFP66_RS03450 (BFP66_03450) coiA 677500..678453 (+) 954 WP_024395874.1 competence protein CoiA Machinery gene
  BFP66_RS03455 (BFP66_03455) - 678497..678862 (+) 366 WP_014637766.1 type II toxin-antitoxin system RelE/ParE family toxin -
  BFP66_RS03460 (BFP66_03460) HI0659 678852..679151 (+) 300 WP_014637767.1 helix-turn-helix domain-containing protein Machinery gene
  BFP66_RS03465 (BFP66_03465) pepF 679261..681063 (+) 1803 WP_024395875.1 oligoendopeptidase F Regulator
  BFP66_RS03470 (BFP66_03470) - 681065..681508 (+) 444 WP_024395876.1 hypothetical protein -
  BFP66_RS03475 (BFP66_03475) - 681519..682067 (+) 549 WP_024395877.1 DUF6630 family protein -
  BFP66_RS03480 (BFP66_03480) - 682142..682861 (+) 720 WP_050573105.1 O-methyltransferase -
  BFP66_RS03485 (BFP66_03485) prsA 682923..683924 (+) 1002 WP_024385839.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11058.73 Da        Isoelectric Point: 7.2059

>NTDB_id=195955 BFP66_RS03460 WP_014637767.1 678852..679151(+) (HI0659) [Streptococcus suis strain GZ0565]
MENSAIGSNWQSVRSELFSEKEIIESDLRVAIMSELIKARHEQGVSQKRLEELSGVSQPVIARMETGKTSPQLDTILKVL
ASLGKTLAVVPLKQERHFQ

Nucleotide


Download         Length: 300 bp        

>NTDB_id=195955 BFP66_RS03460 WP_014637767.1 678852..679151(+) (HI0659) [Streptococcus suis strain GZ0565]
ATGGAAAATAGTGCAATTGGTAGTAACTGGCAATCGGTACGGTCTGAACTCTTCAGTGAGAAGGAAATCATAGAAAGTGA
TTTGCGTGTGGCAATTATGAGCGAACTGATAAAAGCAAGGCATGAACAGGGAGTAAGTCAGAAAAGACTAGAGGAGCTAA
GCGGGGTGAGTCAACCAGTTATTGCAAGAATGGAAACAGGTAAAACTAGTCCACAATTGGACACTATCTTGAAGGTATTG
GCTAGTCTAGGCAAAACTTTAGCAGTTGTGCCTTTGAAACAGGAACGACATTTTCAATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(38-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

58.889

90.909

0.535

Multiple sequence alignment