Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LCW_RS07430 Genome accession   NZ_CP017124
Coordinates   1460676..1461206 (-) Length   176 a.a.
NCBI ID   WP_155275694.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain WiKim38     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1455676..1466206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCW_RS07420 (LCW_07420) secA 1457412..1459775 (-) 2364 WP_004270228.1 preprotein translocase subunit SecA -
  LCW_RS07425 (LCW_07425) hpf 1460004..1460549 (-) 546 WP_004270226.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LCW_RS07430 (LCW_07430) comFC 1460676..1461206 (-) 531 WP_155275694.1 ComF family protein Machinery gene
  LCW_RS07435 (LCW_07435) comFA 1461350..1462681 (-) 1332 WP_069468547.1 DEAD/DEAH box helicase Machinery gene
  LCW_RS07440 (LCW_07440) - 1462741..1463403 (+) 663 WP_039099348.1 YigZ family protein -
  LCW_RS07445 (LCW_07445) - 1463428..1464516 (-) 1089 WP_004270225.1 glycosyltransferase family 4 protein -
  LCW_RS07450 (LCW_07450) hemH 1464626..1465381 (-) 756 WP_418287445.1 ferrochelatase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 20695.83 Da        Isoelectric Point: 9.7337

>NTDB_id=195907 LCW_RS07430 WP_155275694.1 1460676..1461206(-) (comFC) [Latilactobacillus curvatus strain WiKim38]
MTTQGVCPDCQRWQQLYPGEQFTNRALLTYNEPMQQYFQRYKGQGDYRLRHVFQRLIRENFPVQRQTAYIPVPTDPTHLQ
SRGFNPVVGLYEDCFPLTPLLQKLPTEKGQAQKNRAERLATPQFFKCAQNMLLGSKVQQLILLDDIYTTGRTLWHAQQCL
RKRYQTLPIHAITLVH

Nucleotide


Download         Length: 531 bp        

>NTDB_id=195907 LCW_RS07430 WP_155275694.1 1460676..1461206(-) (comFC) [Latilactobacillus curvatus strain WiKim38]
ATGACAACCCAGGGGGTGTGTCCGGATTGCCAGAGATGGCAGCAACTGTATCCAGGCGAACAATTTACTAATCGAGCGTT
GTTAACATACAACGAACCAATGCAACAGTATTTTCAACGCTATAAGGGGCAGGGGGATTATCGATTACGTCACGTATTTC
AACGGCTGATTCGAGAAAATTTTCCTGTGCAACGGCAAACGGCGTATATCCCAGTCCCGACTGATCCAACACATTTGCAA
AGCCGCGGATTCAATCCGGTGGTTGGCTTATACGAGGACTGTTTTCCACTGACCCCATTGTTGCAGAAGCTACCAACTGA
AAAAGGACAAGCACAAAAAAATCGTGCAGAGCGCTTAGCAACGCCGCAATTTTTTAAATGCGCGCAGAACATGCTGTTGG
GTTCCAAGGTGCAACAGTTAATTTTGTTGGATGATATTTATACCACTGGGCGCACGTTATGGCATGCTCAGCAGTGTCTC
CGCAAGCGATACCAAACGCTGCCAATTCACGCAATTACTTTAGTCCACTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

65.493

80.682

0.528

Multiple sequence alignment