Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LCW_RS05910 Genome accession   NZ_CP017124
Coordinates   1160585..1161256 (-) Length   223 a.a.
NCBI ID   WP_069468256.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain WiKim38     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1155585..1166256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCW_RS05885 (LCW_05885) rpsO 1155899..1156168 (-) 270 WP_004271112.1 30S ribosomal protein S15 -
  LCW_RS05890 (LCW_05890) rpsT 1156445..1156699 (+) 255 WP_004271117.1 30S ribosomal protein S20 -
  LCW_RS05895 (LCW_05895) holA 1156754..1157782 (-) 1029 WP_069468254.1 DNA polymerase III subunit delta -
  LCW_RS05900 (LCW_05900) comEC 1157783..1159897 (-) 2115 WP_237023197.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LCW_RS05905 (LCW_05905) - 1160038..1160526 (-) 489 WP_004270740.1 ComE operon protein 2 -
  LCW_RS05910 (LCW_05910) comEA 1160585..1161256 (-) 672 WP_069468256.1 helix-hairpin-helix domain-containing protein Machinery gene
  LCW_RS05915 (LCW_05915) - 1161333..1162379 (-) 1047 WP_080563410.1 SepM family pheromone-processing serine protease -
  LCW_RS05920 (LCW_05920) coaD 1162381..1162875 (-) 495 WP_039099191.1 pantetheine-phosphate adenylyltransferase -
  LCW_RS05925 (LCW_05925) rsmD 1162887..1163441 (-) 555 WP_039099193.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LCW_RS05930 (LCW_05930) - 1163447..1163737 (-) 291 WP_004270748.1 YlbG family protein -
  LCW_RS05935 (LCW_05935) - 1163757..1164845 (-) 1089 WP_065825727.1 CAP-associated domain-containing protein -
  LCW_RS05940 (LCW_05940) - 1164858..1166045 (-) 1188 WP_004270744.1 FtsW/RodA/SpoVE family cell cycle protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24849.55 Da        Isoelectric Point: 10.0133

>NTDB_id=195902 LCW_RS05910 WP_069468256.1 1160585..1161256(-) (comEA) [Latilactobacillus curvatus strain WiKim38]
MWRDYWQRYRRFWWVPCLVIILLGGGVFWQHSRQQRFLSTNQQLMAQSTKRKVKAKPVKQKKSVSKGGFVDIKGAVAHPG
IYPICVAKTRLFEVLKQAGDVTEAADTSQLNLAQTLSDQLIIYVPTKGEAVQAEELVKAADEPQAATDNQAGASPISTDA
KINLNQADATQLKTLNGIGPKKAEQIIAYRDEQGQFKQIEDLQKVGGIGPKTFEQLRPQICVN

Nucleotide


Download         Length: 672 bp        

>NTDB_id=195902 LCW_RS05910 WP_069468256.1 1160585..1161256(-) (comEA) [Latilactobacillus curvatus strain WiKim38]
ATGTGGCGCGACTATTGGCAACGGTATCGTCGATTCTGGTGGGTACCTTGTTTGGTGATAATTTTACTTGGTGGTGGTGT
GTTTTGGCAGCATAGTCGGCAACAACGTTTTCTATCAACCAATCAACAATTGATGGCGCAATCAACTAAGCGAAAAGTGA
AGGCAAAACCCGTCAAACAGAAGAAAAGCGTCTCAAAAGGTGGGTTTGTCGATATTAAAGGCGCTGTGGCACATCCAGGG
ATTTATCCGATTTGTGTTGCAAAGACGCGTTTATTTGAGGTGCTGAAACAAGCGGGGGATGTGACCGAAGCAGCGGATAC
GAGTCAGTTGAACTTAGCGCAAACATTGAGTGACCAACTTATTATCTATGTGCCAACTAAGGGAGAAGCGGTGCAAGCCG
AAGAATTAGTGAAAGCGGCAGACGAGCCACAGGCTGCGACTGACAATCAAGCGGGAGCCAGTCCGATATCAACTGATGCT
AAAATCAACCTAAACCAAGCGGATGCGACACAATTGAAAACGCTAAATGGCATCGGTCCTAAAAAAGCTGAACAAATAAT
TGCATATCGGGATGAGCAAGGGCAGTTTAAACAAATCGAAGATCTTCAAAAAGTTGGGGGAATTGGGCCGAAAACGTTTG
AACAATTACGGCCACAAATTTGTGTTAATTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(160-221)

SLBB domain (SLBB)

(70-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Latilactobacillus sakei subsp. sakei 23K

64.103

100

0.673
  comEA Lactococcus lactis subsp. cremoris KW2

35.841

100

0.363

Multiple sequence alignment