Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   CDH83_RS03940 Genome accession   NZ_CP021770
Coordinates   766616..767686 (-) Length   356 a.a.
NCBI ID   WP_000817928.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain B508     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 761616..772686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDH83_RS03920 (CDH83_03870) - 762151..762903 (+) 753 WP_000923535.1 ABC transporter ATP-binding protein -
  CDH83_RS03925 (CDH83_03875) - 762905..764860 (+) 1956 WP_000499553.1 FtsX-like permease family protein -
  CDH83_RS03930 (CDH83_03880) braR 764970..765638 (+) 669 WP_000076874.1 response regulator transcription factor Regulator
  CDH83_RS03935 (CDH83_03885) - 765635..766573 (+) 939 WP_000620981.1 sensor histidine kinase -
  CDH83_RS03940 (CDH83_03890) xerS 766616..767686 (-) 1071 WP_000817928.1 tyrosine recombinase XerS Machinery gene
  CDH83_RS03945 (CDH83_03895) - 768139..769802 (+) 1664 Protein_734 peptide ABC transporter substrate-binding protein -
  CDH83_RS03950 (CDH83_03900) - 769835..770608 (-) 774 WP_000622398.1 DUF3307 domain-containing protein -
  CDH83_RS03955 (CDH83_03905) - 770598..771284 (-) 687 WP_000280308.1 SatD family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41377.61 Da        Isoelectric Point: 9.2613

>NTDB_id=195895 CDH83_RS03940 WP_000817928.1 766616..767686(-) (xerS) [Streptococcus agalactiae strain B508]
MKRELLLEKIDELKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFLEWLLDSGVANCHHIAEIELSVLENLTKKDME
AFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGNETIEFLEYIDCEYQNKLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS
VNVACFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDASSVEKMVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=195895 CDH83_RS03940 WP_000817928.1 766616..767686(-) (xerS) [Streptococcus agalactiae strain B508]
ATGAAACGTGAATTACTACTCGAAAAAATCGATGAACTAAAAGAAATTATGCCTTGGTATGTTCTAGAATATTATCAATC
AAAGCTTTCTGTTCCTTATAGTTTCACAACACTCTACGAATATTTAAAAGAATATAGACGTTTTCTTGAATGGTTATTGG
ATTCTGGTGTTGCTAATTGTCATCACATTGCAGAAATTGAGCTTTCAGTTTTAGAAAACCTTACTAAAAAAGATATGGAA
GCTTTTATACTATATTTACGAGAACGCCCTTTATTAAATGCTAACACAAGGCAAAATGGGGTGTCTCAAACCACCATTAA
CAGAACTCTATCTGCCTTATCTAGTCTTTTCAAATACCTTACTGAAGAGGTTGAGAATGCTGACGGGGAGCCTTACTTTT
ATCGCAATGTCATGAAAAAAGTCTCAACCAAAAAGAAAAAGGAAACTTTAGCTTCTCGGGCAGAAAATATTAAACAAAAG
TTATTTTTGGGCAATGAAACGATAGAATTCTTAGAGTATATAGATTGTGAATATCAAAACAAACTTTCCAAACGTGCTTT
AGCTTTTTTCAACAAAAATAAAGAGAGAGATTTAGCTATTATTGCTTTGCTACTAGCTTCAGGAGTGCGTCTATCTGAGG
CAGTAAACTTAGATTTAAAGGATATTAACCTTAATGTAATGGTTATTGATGTCACACGAAAAGGGGGGAAAAGGGACTCT
GTCAATGTCGCTTGCTTTGCGAAGCCCTACCTTGCTAATTATTTAGACATCCGTAAAAATAGATACAAAGCAGAAAATCA
GGACATTGCTCTATTTTTATCAGAATACCGTGGGGTGCCAAATCGTATTGATGCTTCAAGTGTAGAGAAAATGGTTGCTA
AGTATTCCCAGGATTTTAAGGTTCGTGTAACACCTCATAAACTAAGGCATACTCTTGCTACTAGGCTATATGATGCTACA
AAATCTCAAGTATTAGTTAGCCACCAACTAGGTCATGCTTCCACTCAAGTTACTGACCTATATACCCATATTGTTAACGA
TGAACAAAAGAACGCTTTAGATAAACTATAG

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(184-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.708

100

0.837