Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BC346_RS07310 Genome accession   NZ_CP017116
Coordinates   1474876..1476675 (-) Length   599 a.a.
NCBI ID   WP_003775546.1    Uniprot ID   E7FXK4
Organism   Erysipelothrix rhusiopathiae strain WH13013     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1469876..1481675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC346_RS07285 (BC346_07285) - 1470234..1471004 (+) 771 WP_003775537.1 PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC -
  BC346_RS07290 (BC346_07290) - 1470997..1471815 (+) 819 WP_003775540.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  BC346_RS07295 (BC346_07295) - 1471879..1473756 (+) 1878 WP_013852628.1 BglG family transcription antiterminator -
  BC346_RS07300 (BC346_07300) - 1473827..1474429 (+) 603 WP_003775544.1 alpha/beta hydrolase -
  BC346_RS07305 (BC346_07305) - 1474426..1474818 (+) 393 WP_003775545.1 CoA-binding protein -
  BC346_RS07310 (BC346_07310) pepF 1474876..1476675 (-) 1800 WP_003775546.1 oligoendopeptidase F Regulator
  BC346_RS07345 (BC346_07345) - 1477757..1478965 (-) 1209 WP_003775547.1 O-antigen ligase family protein -
  BC346_RS07350 (BC346_07350) - 1479055..1479732 (-) 678 WP_003775548.1 hypothetical protein -
  BC346_RS07355 (BC346_07355) gatB 1479771..1481186 (-) 1416 WP_003775549.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 68618.43 Da        Isoelectric Point: 4.3664

>NTDB_id=195818 BC346_RS07310 WP_003775546.1 1474876..1476675(-) (pepF) [Erysipelothrix rhusiopathiae strain WH13013]
MSDKYELPLRSEVDIKDTWDLTPMFKDDDAWNTEFDAIQNDLSEVAAYRGTLTKSAESLLAGLKFRDELSYRIEFLYVYA
HLSFDVDTTNPKYQAMNARVQSLLAQFGSSFSFYEAEILSADEAVIREYLESNEALSLYNHEFDRLFKSRPHILSEKEER
ILASLGEIFGVSSQTFGMLNNADIQFPTIKDESGNDVQLSHGRYSLLMESADRRVREDAFKAMQTTYGNLKNTLASTLSG
NVKVHNFNATIRNYASARQAALAANNIDEEVYDSLLEGIHNNINLLHDYVALREEALGIDDIQMYDIYVPMVDEVDLKFT
YEEAQEVILDALSVLGEEYCAVLKRAFDERWIDVVENKGKRSGAYSSGTYGSAPYILLNWQENIDNVFTLAHELGHSVHS
YFTRKYQPYIYGDYSIFVAEVASTTNENLLLNYLLDQYEDPKVRAYLLNHYLDTVKGTVFRQTQFAEFEHLIHKSDQEGV
ALTADYLIESYYKLNQFYYGESISTEEIGYEWARIPHFYYNYYVYQYATGFSAATLFSETIYNGGDATPYLDFLKSGSSD
YPINVLRKAGVDMTESTAVDTTLEKFGERMAELRTLLVK

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=195818 BC346_RS07310 WP_003775546.1 1474876..1476675(-) (pepF) [Erysipelothrix rhusiopathiae strain WH13013]
ATGTCGGATAAATATGAATTACCACTTCGTAGTGAAGTGGATATAAAAGATACATGGGATTTAACACCGATGTTTAAAGA
TGATGACGCATGGAATACAGAATTTGATGCGATTCAAAATGACTTAAGTGAAGTGGCTGCATACCGTGGTACTTTAACGA
AAAGCGCTGAAAGTTTGTTAGCGGGTCTTAAGTTTCGTGATGAATTAAGTTATCGTATTGAGTTTTTATATGTTTATGCA
CATTTAAGTTTTGATGTCGATACCACAAACCCTAAGTATCAAGCAATGAATGCGCGCGTGCAATCGCTTCTTGCGCAATT
TGGATCAAGTTTTTCGTTCTATGAAGCAGAGATTTTATCTGCCGATGAAGCTGTAATTCGAGAATATCTTGAATCGAATG
AAGCACTCAGTTTATATAATCATGAATTTGATCGTCTTTTCAAATCAAGACCACATATTCTTAGTGAAAAAGAAGAACGC
ATTCTTGCCTCATTAGGAGAAATCTTTGGTGTTTCTTCGCAGACATTTGGCATGTTGAATAATGCAGATATTCAATTCCC
TACAATTAAAGATGAATCGGGAAATGATGTTCAATTATCACACGGTCGTTATTCACTGTTAATGGAAAGTGCAGATCGAC
GTGTTCGTGAAGATGCTTTCAAAGCGATGCAAACAACTTATGGTAATTTAAAGAATACTCTTGCAAGTACGCTGTCGGGA
AATGTTAAGGTTCATAATTTCAATGCAACAATCCGTAATTATGCGTCGGCTCGTCAAGCTGCTCTTGCCGCAAATAATAT
TGACGAAGAAGTTTATGATTCCCTTTTAGAAGGAATTCATAATAATATTAACTTACTGCATGATTATGTAGCCCTTCGTG
AAGAGGCATTGGGTATTGATGATATTCAAATGTATGATATTTATGTCCCAATGGTTGATGAAGTGGATTTGAAGTTTACG
TATGAAGAAGCACAAGAAGTGATTTTGGACGCATTGAGTGTTCTTGGAGAAGAATATTGTGCTGTGTTGAAACGTGCCTT
TGATGAACGCTGGATTGATGTTGTTGAGAATAAAGGAAAACGATCGGGAGCCTATTCTTCAGGTACTTATGGAAGTGCAC
CGTATATTCTTTTAAACTGGCAAGAAAATATAGATAATGTGTTTACTCTTGCTCATGAGCTTGGACACAGTGTTCACTCG
TACTTTACGCGTAAGTATCAACCTTATATTTACGGAGATTATTCTATTTTTGTTGCTGAAGTTGCTTCCACAACGAATGA
GAATTTGCTGTTGAATTATTTGTTGGATCAATATGAGGATCCAAAGGTTCGTGCTTACTTGTTGAATCACTATTTAGACA
CGGTTAAAGGCACGGTGTTCCGTCAAACGCAGTTTGCTGAGTTTGAACACCTTATTCATAAATCAGACCAAGAGGGCGTT
GCTTTAACGGCTGATTATCTGATTGAGTCTTACTATAAACTCAATCAATTCTATTATGGTGAATCAATCAGCACTGAAGA
AATTGGTTATGAGTGGGCACGCATCCCTCATTTCTACTACAATTACTATGTTTACCAATATGCTACAGGATTTAGTGCAG
CAACTTTATTCAGTGAAACAATATATAATGGTGGTGATGCGACACCTTATCTTGATTTCTTGAAGTCAGGAAGTTCGGAT
TATCCTATTAATGTCCTTCGTAAGGCGGGCGTGGATATGACTGAATCGACTGCTGTTGATACTACGCTTGAGAAATTTGG
CGAACGTATGGCTGAATTACGAACATTACTTGTAAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(206-582)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E7FXK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.241

98.998

0.487

Multiple sequence alignment