Detailed information NTG0195741

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: CDC45_RS16035
• Genome accession: NZ_CP021762
• Coordinates: 3369117..3370586 (-)
• Length: 489 a.a.
• NCBI ID: WP_043876674.1
• Uniprot ID: Q8XUR1
• Organism: Ralstonia pseudosolanacearum strain RS 476
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3364117..3375586

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDC45_RS16015 (CDC45_15955)	-	3365782..3367104 (-)	1323	WP_011000796.1	IS5-like element ISRso9 family transposase	-
CDC45_RS26310	-	3367190..3368518 (+)	1329	WP_011003014.1	hypothetical protein	-
CDC45_RS16025 (CDC45_15965)	-	3368576..3368764 (-)	189	WP_043876673.1	hypothetical protein	-
CDC45_RS16035 (CDC45_15975)	sbcB	3369117..3370586 (-)	1470	WP_043876674.1	exodeoxyribonuclease I	Machinery gene
CDC45_RS16040 (CDC45_15980)	eutC	3370613..3371425 (-)	813	WP_011003016.1	ethanolamine ammonia-lyase subunit EutC	-
CDC45_RS16045 (CDC45_15985)	-	3371434..3372828 (-)	1395	WP_011003017.1	ethanolamine ammonia-lyase subunit EutB	-
CDC45_RS16050 (CDC45_15990)	-	3372912..3374432 (-)	1521	WP_011003018.1	aldehyde dehydrogenase family protein	-

Sequence

Protein

• Length: 489 a.a.
• Molecular weight: 55978.01 Da
• Isoelectric Point: 4.9889

>NTDB_id=195741 CDC45_RS16035 WP_043876674.1 3369117..3370586(-) (sbcB) [Ralstonia pseudosolanacearum strain RS 476]
MPASLRCPTRLTVTHTFFWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPMSCLITGITPQQC
RRQGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEITRHLFWRNLIDPYAREWQNTCGRWDLLDVVRTTWALRPDGVEW
PKNGDGKPSFKLEHLSQANGLQHEAAHDALSDVRATIALARRVRAAQPRLFDFCFALRKKERVLAEIGDASRPLLHVSGM
YGVERGCLAVVWPLGWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSADLTEGTTRLPIKSIHINKSPIVIGNLK
TLQPAQAERWGIDFAVIERHAGIAQGAPDLRETWRQVYARELEPIEDVDQNLYGGFVGNDDRRTLNELRTLSGEQLAQLH
PDFADARLPELLFRYRARNFPDTLTEEEYEQWEQLRAERLFEGREGYLTFDAFGERIEQLAAEAAERDDARAQNVLQDLY
DYAQQILPG

Nucleotide

• Length: 1470 bp

>NTDB_id=195741 CDC45_RS16035 WP_043876674.1 3369117..3370586(-) (sbcB) [Ralstonia pseudosolanacearum strain RS 476]
ATGCCGGCATCTTTGCGATGCCCAACCCGCCTGACCGTGACCCACACCTTCTTCTGGCACGACTACGAAACCTTCGGCGC
CGTGCCGCGCCGCGATCGCCCGGCCCAGTTCGCCGGCATCCGTACCGACGCCGAGCTCAACGAGATCGGCGAACCGGTCG
AGCTGTTCTGTCAGCCGTCCAACGACTGGCTGCCCGACCCGATGTCGTGCCTGATCACCGGCATCACGCCGCAGCAGTGC
CGCCGGCAGGGTATCCCCGAGCACCGTTTCGCGCAGGCCATCGAGCGCGAGCTGGCCACGCCCGGCACCATCGGCGTCGG
CTATAACTCCATCCGCTTCGACGATGAGATCACGCGCCACCTGTTCTGGCGCAACCTGATCGATCCGTATGCGCGCGAAT
GGCAGAACACGTGCGGCCGATGGGATCTGCTCGATGTGGTGCGCACCACCTGGGCGCTGCGCCCGGACGGCGTCGAATGG
CCGAAGAACGGCGACGGCAAGCCCAGCTTCAAGCTGGAGCACCTGTCGCAGGCCAACGGCCTGCAGCACGAAGCCGCACA
CGATGCGCTGTCGGATGTGCGGGCCACCATCGCGCTGGCCCGGCGGGTCCGCGCCGCGCAGCCCCGCCTGTTCGATTTCT
GCTTCGCGCTGCGCAAGAAGGAGCGCGTGCTGGCCGAGATCGGCGACGCGTCGCGGCCGTTGCTGCACGTCTCGGGCATG
TACGGCGTGGAGCGGGGCTGCCTGGCGGTAGTGTGGCCGCTGGGCTGGCACCCGACCAACAAGAACGAACTGCTGGTGTG
GGACCTCGCCTGCGATCCGGCCGAGCTGTTCGACCTCGGCGTTGACACCATCCGCGAGCGCCTGTTCACGCGCAGCGCCG
ATCTGACCGAGGGCACCACGCGCTTGCCCATCAAGTCGATCCACATCAACAAGTCGCCCATCGTCATCGGCAACCTGAAG
ACGCTGCAGCCCGCGCAGGCCGAGCGCTGGGGCATCGACTTCGCGGTCATCGAGCGTCATGCCGGTATCGCCCAAGGGGC
GCCCGATCTGCGCGAAACGTGGCGCCAGGTCTACGCCCGCGAGCTGGAGCCGATCGAAGACGTGGACCAGAATCTCTACG
GCGGCTTCGTCGGCAATGACGACCGCCGCACGCTCAACGAACTGCGCACGCTTTCGGGCGAGCAGCTCGCGCAGCTGCAC
CCGGACTTCGCCGATGCGCGCCTGCCCGAACTGCTGTTCCGCTATCGCGCGCGCAATTTTCCCGACACGCTCACGGAAGA
GGAGTACGAACAGTGGGAGCAGTTGCGCGCCGAGCGCCTGTTCGAGGGGCGCGAGGGCTACCTGACCTTCGATGCCTTCG
GCGAGCGGATCGAGCAGCTTGCCGCCGAGGCCGCCGAGCGTGACGACGCGCGCGCGCAGAATGTGCTGCAGGATCTGTAC
GACTACGCTCAGCAGATTCTGCCGGGCTGA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (218-485)

• Exonuclease (RNase_T) (19-199)

3D structure

• AlphaFold DB: Q8XUR1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	46.526	97.137	0.452