Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BS16045_RS18830 Genome accession   NZ_CP017112
Coordinates   3592489..3593178 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain BS16045     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3587489..3598178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS16045_RS18795 (BS16045_03720) flgN 3587669..3588151 (-) 483 WP_003227999.1 flagellar protein FlgN -
  BS16045_RS18800 (BS16045_03721) flgM 3588167..3588433 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  BS16045_RS18805 (BS16045_03722) yvyF 3588514..3588933 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  BS16045_RS18810 (BS16045_03723) comFC 3589007..3589729 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  BS16045_RS18815 (BS16045_03724) comFB 3589693..3589989 (-) 297 WP_003227989.1 late competence protein ComFB -
  BS16045_RS18820 (BS16045_03725) comFA 3590049..3591440 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  BS16045_RS18825 (BS16045_03726) fakBA 3591546..3592391 (-) 846 WP_003244125.1 DegV family protein -
  BS16045_RS18830 (BS16045_03727) degU 3592489..3593178 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BS16045_RS18835 (BS16045_03728) degS 3593261..3594418 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  BS16045_RS18840 (BS16045_03729) yvyE 3594635..3595288 (+) 654 WP_069322933.1 YigZ family protein -
  BS16045_RS18845 (BS16045_03730) tagV 3595288..3596454 (+) 1167 WP_019712707.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  BS16045_RS18850 (BS16045_03731) tagO 3596527..3597603 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=195728 BS16045_RS18830 WP_003219701.1 3592489..3593178(-) (degU) [Bacillus subtilis strain BS16045]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=195728 BS16045_RS18830 WP_003219701.1 3592489..3593178(-) (degU) [Bacillus subtilis strain BS16045]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment