Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   BS16045_RS13040 Genome accession   NZ_CP017112
Coordinates   2490383..2491186 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS16045     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2485383..2496186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS16045_RS13010 (BS16045_02564) glpQB 2486529..2487260 (-) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -
  BS16045_RS13015 yqiI 2487339..2487958 (-) 620 Protein_2508 N-acetylmuramoyl-L-alanine amidase family protein -
  BS16045_RS13020 (BS16045_02567) yqiH 2487973..2488266 (-) 294 WP_003230284.1 lipoprotein -
  BS16045_RS22400 - 2488574..2488726 (+) 153 WP_003230276.1 hypothetical protein -
  BS16045_RS13030 (BS16045_02568) yqiG 2488799..2489917 (+) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  BS16045_RS13040 (BS16045_02570) spo0A 2490383..2491186 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  BS16045_RS13050 (BS16045_02571) spoIVB 2491462..2492742 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  BS16045_RS13055 (BS16045_02572) recN 2492917..2494647 (-) 1731 WP_029317928.1 DNA repair protein RecN Machinery gene
  BS16045_RS13060 (BS16045_02573) argR 2494684..2495133 (-) 450 WP_029317927.1 arginine repressor ArgR -
  BS16045_RS13065 (BS16045_02574) yqxC 2495231..2496076 (-) 846 WP_014477301.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=195697 BS16045_RS13040 WP_003226427.1 2490383..2491186(-) (spo0A) [Bacillus subtilis strain BS16045]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=195697 BS16045_RS13040 WP_003226427.1 2490383..2491186(-) (spo0A) [Bacillus subtilis strain BS16045]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCAGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCTCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment