Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BS16045_RS05710 Genome accession   NZ_CP017112
Coordinates   1095260..1095838 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain BS16045     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1090260..1100838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS16045_RS22915 - 1090771..1091286 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  BS16045_RS22920 - 1091527..1092153 (-) 627 Protein_1049 protoglobin domain-containing protein -
  BS16045_RS05695 (BS16045_01113) comW 1092208..1093737 (-) 1530 WP_069322496.1 FAD-dependent oxidoreductase -
  BS16045_RS05700 (BS16045_01114) yhxC 1093849..1094706 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  BS16045_RS05705 (BS16045_01115) yhzC 1094734..1094967 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  BS16045_RS05710 (BS16045_01116) comK 1095260..1095838 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  BS16045_RS05715 (BS16045_01117) yhxD 1095883..1096782 (-) 900 WP_069322497.1 SDR family oxidoreductase -
  BS16045_RS05720 (BS16045_01118) yhjA 1096999..1097268 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  BS16045_RS05725 (BS16045_01119) yhjB 1097311..1098780 (-) 1470 WP_069322498.1 sodium:solute symporter family protein -
  BS16045_RS05730 (BS16045_01120) yhjC 1098777..1098977 (-) 201 WP_024571728.1 DUF3311 domain-containing protein -
  BS16045_RS05735 (BS16045_01121) - 1099185..1099547 (-) 363 WP_024571727.1 hypothetical protein -
  BS16045_RS05740 (BS16045_01122) yhjE 1099699..1100322 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  BS16045_RS05745 (BS16045_01123) lepB 1100324..1100830 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=195677 BS16045_RS05710 WP_003245329.1 1095260..1095838(+) (comK) [Bacillus subtilis strain BS16045]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=195677 BS16045_RS05710 WP_003245329.1 1095260..1095838(+) (comK) [Bacillus subtilis strain BS16045]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment