Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BHF65_RS08255 Genome accession   NZ_CP017107
Coordinates   1716737..1718404 (-) Length   555 a.a.
NCBI ID   WP_069469466.1    Uniprot ID   A0A1D7TTA8
Organism   Ligilactobacillus salivarius strain CICC 23174     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1711737..1723404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BHF65_RS08225 (BHF65_08225) - 1712392..1714206 (-) 1815 WP_225359941.1 DUF2207 domain-containing protein -
  BHF65_RS08230 (BHF65_08230) - 1714311..1714610 (-) 300 WP_003705935.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  BHF65_RS08235 (BHF65_08235) yihA 1714628..1715218 (-) 591 WP_003699861.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  BHF65_RS08240 (BHF65_08240) - 1715301..1715525 (-) 225 WP_003705934.1 YneF family protein -
  BHF65_RS08245 (BHF65_08245) - 1715652..1715906 (-) 255 WP_003704077.1 DUF896 domain-containing protein -
  BHF65_RS08250 (BHF65_08250) lexA 1716053..1716673 (+) 621 WP_003705933.1 transcriptional repressor LexA -
  BHF65_RS08255 (BHF65_08255) recN 1716737..1718404 (-) 1668 WP_069469466.1 DNA repair protein RecN Machinery gene
  BHF65_RS08260 (BHF65_08260) - 1718409..1718867 (-) 459 WP_003699854.1 arginine repressor -
  BHF65_RS08265 (BHF65_08265) - 1718892..1719719 (-) 828 WP_003704070.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  BHF65_RS08270 (BHF65_08270) - 1719722..1720639 (-) 918 WP_191981190.1 polyprenyl synthetase family protein -
  BHF65_RS08275 (BHF65_08275) - 1720605..1720832 (-) 228 WP_069469467.1 exodeoxyribonuclease VII small subunit -
  BHF65_RS08280 (BHF65_08280) xseA 1720832..1722172 (-) 1341 WP_003705928.1 exodeoxyribonuclease VII large subunit -
  BHF65_RS08285 (BHF65_08285) folD 1722165..1723022 (-) 858 WP_069469468.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 63236.03 Da        Isoelectric Point: 4.8139

>NTDB_id=195645 BHF65_RS08255 WP_069469466.1 1716737..1718404(-) (recN) [Ligilactobacillus salivarius strain CICC 23174]
MLQELSIKDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRGSTEFIRKGEKKAVIQGLFTLPREANTYNIL
EEYGIDSEDGQIILQRDLYRGGRNICRINGMMVNLATLRKVGETLIDIHGQNEHQELMKPENHIDLLDEYDKKTSELRNQ
YQVVYQNYRKLKLSMEKKEADEKAWAQRLDMLNFQVKEIGEAGLKINEEDELVEEKNKLDNFQTIHDALELSYQILSGEK
IDVVGNLGNAMNELSDISDLSENLQEINTKISDAFYSLEDVARDISDELDSMEWNGERLNEIEERLELIHQLKRKYGDTI
EDILHYHIRIVKELREMENAEQNSEKQERQLSEALEKVKELAIKLSKQRKKSAKKLEKMIHEQLSALYMDKAVFEVKFLN
NSKLYSKGIDKVEFYIQTNPGEEMGPLAKIASGGELSRIMLALKTIFSQKMGVTSIIFDEVDTGVSGRVAQAIAEKISQI
SNNSQVLCITHLPQVAAIADNHYYISKSVNDGRTETSLEELDEKQKIREIARMLSGSEITELTLKHAEELIKMSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=195645 BHF65_RS08255 WP_069469466.1 1716737..1718404(-) (recN) [Ligilactobacillus salivarius strain CICC 23174]
ATGTTACAAGAATTATCAATAAAGGATTTCGCCATTATAGATGAAATACAAATATCATTTCAACCTAAGATGACAGTATT
GACGGGTGAGACAGGTGCTGGTAAATCAATTATTATTGATGCTCTGGGCTTACTAGCAGGAGGCAGAGGTTCTACTGAAT
TTATTCGTAAGGGTGAGAAAAAAGCTGTTATTCAGGGGTTATTTACATTACCTAGAGAAGCTAATACTTACAACATTTTG
GAAGAATACGGAATAGATTCTGAAGATGGACAAATAATCTTGCAAAGAGATTTATATCGAGGCGGAAGAAATATTTGTCG
CATCAATGGAATGATGGTAAATTTAGCAACTTTACGAAAGGTAGGAGAAACATTAATAGATATTCATGGGCAGAATGAGC
ACCAAGAATTGATGAAGCCAGAAAATCATATAGATTTGTTAGATGAATATGATAAAAAAACATCTGAGTTAAGAAATCAA
TATCAAGTTGTGTATCAAAATTATCGTAAGCTAAAATTATCAATGGAAAAAAAAGAAGCTGATGAGAAGGCCTGGGCCCA
AAGACTAGATATGCTAAATTTCCAAGTCAAAGAAATTGGAGAAGCTGGTTTAAAAATTAATGAAGAAGATGAACTAGTAG
AAGAAAAAAATAAATTGGATAATTTTCAAACAATACATGATGCTTTAGAATTGAGTTATCAAATTTTATCTGGTGAAAAA
ATAGATGTAGTTGGAAATTTAGGAAATGCAATGAATGAGTTAAGCGATATTTCAGATTTATCAGAAAATCTTCAAGAGAT
CAATACTAAAATTTCAGATGCTTTTTATAGTCTAGAAGATGTCGCTCGTGATATTTCAGATGAACTTGATTCAATGGAGT
GGAATGGAGAAAGGTTAAACGAAATAGAGGAAAGACTAGAGTTGATTCATCAATTGAAAAGAAAATATGGTGATACGATA
GAGGATATTTTGCATTATCATATTAGAATTGTAAAAGAATTAAGAGAAATGGAGAATGCGGAACAAAATTCAGAAAAGCA
AGAGAGACAATTATCTGAGGCATTAGAAAAAGTAAAAGAATTAGCAATAAAACTTTCGAAACAGCGGAAAAAAAGCGCTA
AAAAATTAGAAAAAATGATTCATGAACAATTAAGTGCATTATATATGGACAAAGCTGTATTTGAAGTTAAATTTTTAAAT
AATTCTAAATTATATTCTAAAGGTATTGATAAAGTTGAATTTTATATTCAAACTAATCCAGGTGAAGAAATGGGCCCATT
AGCTAAGATAGCTTCAGGTGGTGAACTTTCACGGATAATGTTAGCTTTAAAAACAATTTTTTCTCAAAAGATGGGTGTCA
CAAGTATTATCTTTGATGAGGTTGATACTGGTGTTAGCGGTCGTGTAGCTCAAGCGATTGCTGAAAAAATAAGCCAAATT
TCAAATAATTCACAAGTTTTATGCATTACTCACTTACCGCAAGTTGCAGCAATTGCAGACAATCATTATTATATTTCAAA
ATCTGTTAACGATGGTAGAACAGAAACTTCATTAGAAGAATTAGATGAAAAACAAAAAATTAGAGAGATAGCAAGAATGT
TATCTGGATCTGAAATTACAGAATTAACATTGAAACATGCAGAAGAATTAATTAAAATGTCAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D7TTA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.902

100

0.494

Multiple sequence alignment