Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM361_RS22805 Genome accession   NZ_CP021732
Coordinates   4465652..4466128 (-) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli strain AR_0114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4460652..4471128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM361_RS22765 (AM361_22680) tmaR 4461791..4462120 (+) 330 WP_000450409.1 DUF496 family protein -
  AM361_RS27205 (AM361_22685) - 4462221..4462403 (-) 183 WP_024198358.1 EutP/PduV family microcompartment system protein -
  AM361_RS26635 - 4462857..4463246 (-) 390 WP_077875581.1 transposase -
  AM361_RS26435 - 4464044..4464124 (-) 81 Protein_4184 hypothetical protein -
  AM361_RS22780 (AM361_22695) - 4464224..4464373 (-) 150 Protein_4185 DUF5983 family protein -
  AM361_RS22785 (AM361_22700) - 4464370..4464747 (-) 378 WP_042046912.1 TA system toxin CbtA family protein -
  AM361_RS22790 (AM361_22705) cbeA 4464837..4465205 (-) 369 WP_073961352.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AM361_RS22800 (AM361_22715) yeeT 4465368..4465589 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  AM361_RS22805 (AM361_22720) radC 4465652..4466128 (-) 477 WP_001186775.1 RadC family protein Machinery gene
  AM361_RS22810 (AM361_22725) - 4466144..4466617 (-) 474 WP_001350782.1 antirestriction protein -
  AM361_RS22820 (AM361_22735) - 4466959..4467777 (-) 819 WP_001234738.1 DUF932 domain-containing protein -
  AM361_RS22830 (AM361_22745) - 4467895..4468090 (-) 196 Protein_4192 DUF905 family protein -
  AM361_RS22835 (AM361_22750) - 4468161..4471007 (-) 2847 WP_078405728.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=195597 AM361_RS22805 WP_001186775.1 4465652..4466128(-) (radC) [Escherichia coli strain AR_0114]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=195597 AM361_RS22805 WP_001186775.1 4465652..4466128(-) (radC) [Escherichia coli strain AR_0114]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399