Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AM361_RS19465 Genome accession   NZ_CP021732
Coordinates   3756932..3757447 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain AR_0114     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3751932..3762447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM361_RS19425 (AM361_19340) csrA 3752824..3753009 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AM361_RS19450 (AM361_19365) yqaB 3754162..3754728 (+) 567 WP_001521122.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AM361_RS19455 (AM361_19370) yqaA 3754725..3755153 (+) 429 WP_001287454.1 YqaA family protein -
  AM361_RS19460 (AM361_19375) gshA 3755226..3756782 (+) 1557 WP_001521120.1 glutamate--cysteine ligase -
  AM361_RS19465 (AM361_19380) luxS 3756932..3757447 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AM361_RS19470 (AM361_19385) emrB 3757511..3759049 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AM361_RS19475 (AM361_19390) emrA 3759066..3760238 (-) 1173 WP_020233875.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AM361_RS19480 (AM361_19395) emrR 3760365..3760895 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AM361_RS19485 (AM361_19400) ygaH 3760986..3761321 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  AM361_RS19490 (AM361_19405) ygaZ 3761311..3762048 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=195586 AM361_RS19465 WP_001130211.1 3756932..3757447(+) (luxS) [Escherichia coli strain AR_0114]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=195586 AM361_RS19465 WP_001130211.1 3756932..3757447(+) (luxS) [Escherichia coli strain AR_0114]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment