Detailed information NTG0195583

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AM361_RS19160
• Genome accession: NZ_CP021732
• Coordinates: 3700311..3701303 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AR_0114
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3695311..3706303

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AM361_RS19130 (AM361_19045)	ispD	3695372..3696082 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AM361_RS19135 (AM361_19050)	ispF	3696082..3696561 (+)	480	WP_001521152.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AM361_RS19140 (AM361_19055)	truD	3696558..3697607 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
AM361_RS19145 (AM361_19060)	surE	3697588..3698349 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AM361_RS19150 (AM361_19065)	pcm	3698343..3698969 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AM361_RS19155 (AM361_19070)	nlpD	3699154..3700248 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AM361_RS19160 (AM361_19075)	rpoS	3700311..3701303 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AM361_RS19165 (AM361_19080)	-	3701424..3701831 (-)	408	WP_001521151.1	MarR family transcriptional regulator	-
AM361_RS19170 (AM361_19085)	-	3701978..3702571 (+)	594	Protein_3510	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AM361_RS19175 (AM361_19090)	-	3702571..3703998 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AM361_RS19180 (AM361_19095)	-	3704009..3704245 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AM361_RS19185 (AM361_19100)	ygbN	3704284..3705648 (-)	1365	WP_000104455.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=195583 AM361_RS19160 WP_000081550.1 3700311..3701303(+) (rpoS) [Escherichia coli strain AR_0114]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=195583 AM361_RS19160 WP_000081550.1 3700311..3701303(+) (rpoS) [Escherichia coli strain AR_0114]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715