Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CDC27_RS14195 Genome accession   NZ_CP021726
Coordinates   2773660..2774175 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain Combat11I9     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2768660..2779175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDC27_RS14170 (CDC27_14150) ygaZ 2769059..2769796 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  CDC27_RS14175 (CDC27_14155) ygaH 2769786..2770121 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  CDC27_RS14180 (CDC27_14160) emrR 2770212..2770742 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CDC27_RS14185 (CDC27_14165) emrA 2770869..2772041 (+) 1173 WP_072685813.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CDC27_RS14190 (CDC27_14170) emrB 2772058..2773596 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CDC27_RS14195 (CDC27_14175) luxS 2773660..2774175 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CDC27_RS14200 (CDC27_14180) gshA 2774325..2775881 (-) 1557 WP_072685815.1 glutamate--cysteine ligase -
  CDC27_RS14205 (CDC27_14185) yqaA 2775954..2776382 (-) 429 WP_001287454.1 YqaA family protein -
  CDC27_RS14210 (CDC27_14190) yqaB 2776379..2776945 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CDC27_RS14245 (CDC27_14225) csrA 2778402..2778587 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=195477 CDC27_RS14195 WP_001130211.1 2773660..2774175(-) (luxS) [Escherichia coli strain Combat11I9]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=195477 CDC27_RS14195 WP_001130211.1 2773660..2774175(-) (luxS) [Escherichia coli strain Combat11I9]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATTTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731