Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A7J08_RS09470 Genome accession   NZ_CP017088
Coordinates   1895292..1896659 (-) Length   455 a.a.
NCBI ID   WP_079739304.1    Uniprot ID   A0A3Q8BJY0
Organism   Streptococcus suis strain SRD478     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1890292..1901659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS09445 (A7J08_09195) - 1891050..1892330 (-) 1281 WP_148115854.1 MFS transporter -
  A7J08_RS09450 (A7J08_09200) - 1892421..1893080 (-) 660 WP_053867178.1 hypothetical protein -
  A7J08_RS09455 (A7J08_09205) - 1893085..1893531 (-) 447 WP_053867177.1 LytTR family DNA-binding domain-containing protein -
  A7J08_RS09460 (A7J08_09210) - 1893708..1894466 (-) 759 WP_013730631.1 TIGR00266 family protein -
  A7J08_RS09465 (A7J08_09215) - 1894674..1895168 (-) 495 WP_053867469.1 carbonic anhydrase -
  A7J08_RS09470 (A7J08_09220) radA 1895292..1896659 (-) 1368 WP_079739304.1 DNA repair protein RadA Machinery gene
  A7J08_RS09475 (A7J08_09225) - 1896666..1897199 (-) 534 WP_053867471.1 histidine phosphatase family protein -
  A7J08_RS09480 (A7J08_09230) - 1897206..1897649 (-) 444 WP_053867472.1 dUTP diphosphatase -
  A7J08_RS09485 (A7J08_09235) - 1897668..1898654 (-) 987 WP_024384172.1 virulence RhuM family protein -
  A7J08_RS09490 (A7J08_09240) - 1898937..1899803 (-) 867 WP_053866898.1 helix-turn-helix transcriptional regulator -
  A7J08_RS09495 (A7J08_09250) - 1900321..1900899 (+) 579 WP_032498661.1 hypothetical protein -
  A7J08_RS09500 (A7J08_09255) - 1900924..1901112 (+) 189 WP_029172888.1 hypothetical protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49899.43 Da        Isoelectric Point: 6.1911

>NTDB_id=195420 A7J08_RS09470 WP_079739304.1 1895292..1896659(-) (radA) [Streptococcus suis strain SRD478]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVVRTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=195420 A7J08_RS09470 WP_079739304.1 1895292..1896659(-) (radA) [Streptococcus suis strain SRD478]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAATACCATTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAACTCAATGAAGTTTCCTCCATTCAAGTGGTCCGCACCAAGACTAACATGGAAGAGTTCAAC
CGTGTCCTCGGTGGCGGTGTGGTGCCAGGAAGTCTGGTCTTGATCGGAGGCGATCCAGGAATCGGAAAATCCACCCTGCT
CTTGCAGGTTTCTACCCAGCTTTCGACCATTGGTACCGTTCTCTATGTGTCGGGGGAAGAGTCTGCTCAGCAGATTAAGT
TGCGAGCGGAACGTTTAGGGGACATCGACAGTGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATAAAACCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGCCCTGACATTTCTAGCGTGCAAGG
TTCTGTCAGTCAGGTCCGTGAAGTAACCAATGAACTTATGCAGATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAGGGAACCCTGGCTGGACCGCGGACCCTGGAGCACATGGTGGACACCGTTCTCTATTTTGAGGGT
GAGAGACAGCACACCTTTCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCACAGGGTTTGGTCGAAGTTCTCAATCCTAGTGAGGTCTTTCTGGAAGAGCGTCTGGATGGGGCGACAGGATCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCCCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGATTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGTCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAATCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCGACCAACCCACAAGAGTGCTTTATAGGCGAAATTGGTCTGACAGGAGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCTAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCTCTGACCGGTATCAAGGTGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTGT
TCAACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(67-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q8BJY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624

Multiple sequence alignment