Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   A7J08_RS08610 Genome accession   NZ_CP017088
Coordinates   1721602..1723392 (-) Length   596 a.a.
NCBI ID   WP_044682350.1    Uniprot ID   A0A116MPN5
Organism   Streptococcus suis strain SRD478     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1716602..1728392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS08585 (A7J08_08370) - 1716922..1717287 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  A7J08_RS08590 (A7J08_08375) - 1717409..1718311 (-) 903 WP_044759829.1 ABC transporter permease -
  A7J08_RS08595 (A7J08_08380) opp4B 1718325..1719281 (-) 957 WP_002938143.1 oligopeptide ABC transporter permease -
  A7J08_RS08600 (A7J08_08385) - 1719283..1720224 (-) 942 WP_053866823.1 ATP-binding cassette domain-containing protein -
  A7J08_RS08605 (A7J08_08390) - 1720227..1721225 (-) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  A7J08_RS08610 (A7J08_08395) oppA 1721602..1723392 (-) 1791 WP_044682350.1 oligopeptide ABC transporter substrate-binding protein Regulator
  A7J08_RS08615 (A7J08_08400) pbp3 1723605..1724846 (+) 1242 WP_053866661.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  A7J08_RS08620 (A7J08_08405) sufB 1725134..1726549 (-) 1416 WP_002938151.1 Fe-S cluster assembly protein SufB -
  A7J08_RS08625 (A7J08_08410) sufU 1726862..1727302 (-) 441 WP_053867467.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65682.68 Da        Isoelectric Point: 4.6105

>NTDB_id=195416 A7J08_RS08610 WP_044682350.1 1721602..1723392(-) (oppA) [Streptococcus suis strain SRD478]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPAEVKQDGTAVADAQLKYAWVSPTTSSGLLIDELTENTTDST
FGGMVDISMFGYDGERKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGIRFDDKFLN
IEGMQEFVDGKASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTKPKTSSLKIDIVSPDTIVSEMKAGNYDIAEMPVDQLDSYKDASNLNIVGQLESSYEYI
SFNFGKYDEAAGKNVMDENAKMNDVKLRQAIAYAIDTKTAGKSLYNGLYHPAKSLIISFFGDIHDSELEGYSYDPEKAKK
LLDEAGYKDVDGDGIREGKDGKAFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAID
MYAGGWSTGYDPNPSGLWGPIAAFNMSRFVSDENTKLLEAISSAESFDDKKNVENYKAWQKYAHEQAFAIPTFESEKITA
VNKRVKSYDTKYGSASGTGLAYEGIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=195416 A7J08_RS08610 WP_044682350.1 1721602..1723392(-) (oppA) [Streptococcus suis strain SRD478]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCAGCTGAAGTAAAACAAGATGGAACAGCAGTCGCAGATGCTCAAT
TGAAATATGCTTGGGTATCTCCTACAACTTCATCAGGTCTTTTAATTGACGAGTTGACTGAGAATACTACTGATTCAACA
TTTGGTGGTATGGTTGATATTTCAATGTTCGGTTACGACGGAGAACGTAAGTTGGACGACTCAGGTCTTGCCAAGGCTGA
ATTTGATGTAAAAGGCAAGAAAATCACAGTCAGCTTGACTGGTAAGGATTACAAGTGGTCAGATGGTGAGCCATTCACAA
TCAACGACTATATCTTTACAATTAAGTCAATGGCAAGCAAAGACTATACAGGTATTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGTATGCAAGAATTTGTTGATGGAAAAGCATCAGACATCTCTGGTATTAAGAAAGTTGATGACTATACAGTAGA
ATTGACTGTAAAAGAAATGTCCCCTTCAATGATGTATGCAGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAATACTCACGTACTGCGAAGCTTGTTGGTATGGGGCCGTGGAAG
ATTAAGGAAATCGTCAATGGTGAGTCTATCACTTACGTACCAAACGAATACTTCTTCAAGGGTACGAAACCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCTGATACTATTGTTTCTGAAATGAAAGCGGGGAATTATGATATCGCAGAAATGC
CGGTTGATCAGTTAGATTCATATAAGGATGCTTCTAACTTGAATATCGTTGGTCAGTTAGAGTCGTCTTATGAGTATATC
TCATTTAATTTTGGTAAATATGACGAAGCAGCTGGTAAGAACGTTATGGATGAAAATGCCAAGATGAATGATGTGAAACT
TCGTCAAGCGATTGCCTATGCGATTGATACCAAGACAGCTGGTAAGTCATTGTACAACGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAATTGGAAGGCTATTCGTACGATCCTGAAAAAGCGAAAAAA
CTTTTGGATGAAGCTGGCTACAAAGATGTAGATGGTGATGGTATCCGTGAAGGCAAAGATGGTAAGGCATTCAAGATTAC
CTTTGCGGCTCGTAAACGTACTGAAGCTAACGAAGCTCTTGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGGCGTACAGTTGAAGGGAAGTCGTTCTACAATTCAGTTCAGGCTAATGATGCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAAGTGGTCTATGGGGGCCTATCGCAGCCTTCAATATGTC
ACGTTTCGTGTCCGATGAAAACACTAAGTTATTGGAAGCTATCAGTTCAGCAGAGTCGTTTGATGATAAGAAAAACGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACGTTTGAGTCAGAAAAAATTACTGCG
GTTAATAAACGTGTGAAAAGCTATGATACAAAATACGGCTCAGCTTCAGGCACAGGTCTTGCTTATGAGGGTATCGAACT
TACTGCTGATAAAGGTGTAGTGGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A116MPN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

99.664

100

0.997

Multiple sequence alignment