Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   A7J08_RS08550 Genome accession   NZ_CP017088
Coordinates   1711381..1712115 (-) Length   244 a.a.
NCBI ID   WP_002942356.1    Uniprot ID   G7SIC8
Organism   Streptococcus suis strain SRD478     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1706381..1717115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS08520 (A7J08_08305) - 1706609..1706905 (-) 297 WP_002942375.1 YlxR family protein -
  A7J08_RS08525 (A7J08_08310) nusA 1706922..1708064 (-) 1143 WP_053866818.1 transcription termination factor NusA -
  A7J08_RS08530 (A7J08_08315) rimP 1708137..1708607 (-) 471 WP_079739221.1 ribosome maturation factor RimP -
  A7J08_RS08535 (A7J08_08320) trmB 1708865..1709503 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  A7J08_RS08540 (A7J08_08325) ccrZ 1709500..1710294 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  A7J08_RS08545 (A7J08_08330) - 1710344..1711384 (-) 1041 WP_044682344.1 ABC transporter permease -
  A7J08_RS08550 (A7J08_08335) pptA 1711381..1712115 (-) 735 WP_002942356.1 ABC transporter ATP-binding protein Regulator
  A7J08_RS08555 (A7J08_08340) - 1712178..1712591 (+) 414 WP_024385169.1 HIT family protein -
  A7J08_RS08560 (A7J08_08345) - 1712593..1712895 (+) 303 WP_053866820.1 chemotaxis protein -
  A7J08_RS08565 (A7J08_08350) - 1713004..1714197 (-) 1194 WP_024387521.1 LCP family protein -
  A7J08_RS08570 (A7J08_08355) - 1714194..1714721 (-) 528 WP_053866821.1 GNAT family N-acetyltransferase -
  A7J08_RS08575 (A7J08_08360) tsaE 1714714..1715154 (-) 441 WP_024412041.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  A7J08_RS08580 (A7J08_08365) - 1715255..1716919 (-) 1665 WP_053866822.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26832.10 Da        Isoelectric Point: 4.3606

>NTDB_id=195415 A7J08_RS08550 WP_002942356.1 1711381..1712115(-) (pptA) [Streptococcus suis strain SRD478]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=195415 A7J08_RS08550 WP_002942356.1 1711381..1712115(-) (pptA) [Streptococcus suis strain SRD478]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACACCTT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGTTGATTGTTGATGAGCCTTTT
CTGGGTTTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGCACTTCCATTCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTCCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACACAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SIC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721

Multiple sequence alignment