Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CCD88_RS11785 Genome accession   NZ_CP021724
Coordinates   2088108..2088635 (-) Length   175 a.a.
NCBI ID   WP_002229985.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 12-330     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2083108..2093635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCD88_RS11770 (CCD88_11970) - 2083413..2084420 (+) 1008 WP_096101011.1 IS5 family transposase -
  CCD88_RS11780 (CCD88_11985) polA 2085167..2087983 (-) 2817 WP_002229990.1 DNA polymerase I -
  CCD88_RS11785 (CCD88_11990) luxS 2088108..2088635 (-) 528 WP_002229985.1 S-ribosylhomocysteine lyase Regulator
  CCD88_RS11790 (CCD88_11995) - 2088657..2089076 (-) 420 WP_002229986.1 DUF2251 domain-containing protein -
  CCD88_RS11800 (CCD88_12000) - 2089275..2089952 (-) 678 WP_002215827.1 IS1595-like element ISNme3 family transposase -
  CCD88_RS11805 (CCD88_12005) - 2089992..2090870 (-) 879 Protein_2013 YeiH family protein -
  CCD88_RS11810 (CCD88_12010) cyaY 2090897..2091220 (-) 324 WP_002218099.1 iron donor protein CyaY -
  CCD88_RS11815 (CCD88_12015) - 2091291..2091461 (+) 171 WP_002218098.1 lipoprotein -
  CCD88_RS11820 (CCD88_12020) lysA 2091472..2092692 (+) 1221 WP_002229987.1 diaminopimelate decarboxylase -
  CCD88_RS11825 (CCD88_12025) - 2092752..2092844 (-) 93 WP_002233157.1 methionine/alanine import family NSS transporter small subunit -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19454.30 Da        Isoelectric Point: 5.9132

>NTDB_id=195368 CCD88_RS11785 WP_002229985.1 2088108..2088635(-) (luxS) [Neisseria meningitidis strain 12-330]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCVPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADTWLASMQDVLNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNAQSAKNAV

Nucleotide


Download         Length: 528 bp        

>NTDB_id=195368 CCD88_RS11785 WP_002229985.1 2088108..2088635(-) (luxS) [Neisseria meningitidis strain 12-330]
ATGCCCCTGTTAGACAGTTTCAAAGTCGACCACACCCGTATGCACGCCCCTGCCGTACGCGTGGCGAAAACCATGACCAC
GCCCAAAGGCGATACCATTACCGTATTCGACCTGCGCTTTTGCGTTCCTAACAAAGAAATCCTGCCTGAAAAAGGCATAC
ACACGCTGGAGCATTTGTTCGCAGGCTTTATGCGCGACCACTTGAACGGCAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTCTACATGAGCCTTATCGGCACGCCTTCCGAACAGCAGGTCGCCGATACGTGGCTGGCTTC
GATGCAGGATGTTTTGAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCAAATGC
ACTCGCTCGCCGAAGCGCAGCAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAATGAAGAGTTGACG
CTGGATGAAGGGCTGCTGAACGCCCAATCCGCCAAAAATGCCGTCTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

76.647

95.429

0.731