Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ABE28_RS16170 Genome accession   NZ_CP017080
Coordinates   3328252..3330624 (-) Length   790 a.a.
NCBI ID   WP_064462122.1    Uniprot ID   A0A1B3XRN6
Organism   Peribacillus muralis strain G25-68     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3323252..3335624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE28_RS16155 (ABE28_016155) dtd 3324774..3325217 (-) 444 WP_064462125.1 D-aminoacyl-tRNA deacylase -
  ABE28_RS16160 (ABE28_016160) - 3325233..3327431 (-) 2199 WP_064462124.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ABE28_RS16165 (ABE28_016165) - 3327749..3328261 (-) 513 WP_064462123.1 adenine phosphoribosyltransferase -
  ABE28_RS16170 (ABE28_016170) recJ 3328252..3330624 (-) 2373 WP_064462122.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ABE28_RS16175 (ABE28_016175) secDF 3330757..3333018 (-) 2262 WP_064462121.1 protein translocase subunit SecDF -
  ABE28_RS16180 (ABE28_016180) - 3333205..3333510 (-) 306 WP_064462120.1 post-transcriptional regulator -
  ABE28_RS16185 (ABE28_016185) spoVB 3333681..3335243 (+) 1563 WP_064462119.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 790 a.a.        Molecular weight: 88447.15 Da        Isoelectric Point: 4.8125

>NTDB_id=195286 ABE28_RS16170 WP_064462122.1 3328252..3330624(-) (recJ) [Peribacillus muralis strain G25-68]
MLKPKTRWNLRTADENKVAILAEELHITPLVAALLVNRGMDTIDSARSFLFVKNQTFHDPFLLKDMDKAVYRIKEAIQNG
EKIRIFGDYDADGVTSTTVMLTTLMRMGADVDFYIPNRFTEGYGPNPMAFRLAAEQGVKVLITVDTGISAVAEADLAGEL
GMDYILTDHHEPGPVLPKALAIIHPKLEDGSYPFKDLAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLKGENRLI
AAKGIEQLRLTGRPGLVALMKVANIQQEALNEESIGFAMAPRINAVGRLGDADPAVDLLMSANLAEAIELANEINDINKE
RQAMVATMAEEAIKEVEENFPPASNGVLIIGREGWNAGVVGIVASKLVERFYRPTIVLSYDQEKELAKGSARSIAGFDLF
ESLSSCRELLPHFGGHPMAAGMTLKIEDVQELRDRMNAIAKEQLTEEDFTPITDLDGETALADVSIQTIQEMSLLAPFGV
TNPKPRILIDSVQLSSVRKIGANQNHLKVQLEDGDNHKLDGVGFGLGHFVDEIAPHAEVSMIGELSINEWNNMKKPQIFV
QDISVDHWQLFDYRGKGQTEKWLADIPANRKIVIFSEDILARHPFLQNHPELVHIKNGEDADQLDCFGAHVVFMDMPPLR
DVLKRVIANKQPSRIYAHFSHDQDHFLSTMPTRDHFKWFYAFLAKKGPLDVKRYGDDLAKYRGWSRDTVDFISKVFFELD
FVTIENGLIMLTTNAKKRDLSESESFIRKKEQFELEQELVYSSYQQLFDWFNLYLVHEATDLEEETKQWI

Nucleotide


Download         Length: 2373 bp        

>NTDB_id=195286 ABE28_RS16170 WP_064462122.1 3328252..3330624(-) (recJ) [Peribacillus muralis strain G25-68]
ATGTTAAAGCCTAAAACGCGGTGGAACTTGCGAACTGCCGATGAAAACAAAGTTGCTATACTAGCGGAAGAGCTTCATAT
CACACCTTTGGTTGCAGCCCTGCTTGTGAATCGAGGCATGGATACGATCGATAGTGCCCGATCCTTTTTATTTGTAAAAA
ATCAAACTTTCCATGATCCATTTTTATTGAAAGATATGGATAAAGCCGTATATAGAATAAAAGAAGCGATTCAAAATGGA
GAAAAAATAAGGATATTCGGTGATTATGATGCCGATGGAGTAACATCGACTACGGTGATGTTGACGACGCTGATGAGAAT
GGGAGCCGATGTGGATTTTTATATTCCGAACCGGTTTACGGAGGGCTATGGCCCGAATCCGATGGCATTTCGCCTGGCGG
CTGAGCAAGGAGTGAAGGTATTGATCACCGTTGATACCGGAATTTCGGCAGTCGCGGAAGCGGACCTTGCCGGCGAGCTT
GGCATGGATTATATCTTGACCGACCACCATGAACCAGGTCCTGTACTGCCAAAGGCATTGGCCATCATCCATCCTAAACT
GGAGGATGGTTCATATCCCTTTAAAGACCTTGCAGGAGTGGGTGTCGCCTTTAAGCTGGCGCACGCCTTGCTTGGCGAAC
TGCCTGAGGATTTGCTAGAAATAGCGGCAATCGGCACCATTGCGGATTTGGTGCCTTTAAAAGGGGAGAACCGCCTCATC
GCAGCCAAAGGAATCGAGCAGCTGCGCTTGACTGGCCGTCCGGGGCTTGTTGCCCTAATGAAAGTGGCGAATATCCAACA
GGAAGCCTTGAATGAGGAATCGATCGGGTTTGCCATGGCTCCGCGGATCAATGCAGTCGGCCGGCTTGGTGATGCCGACC
CGGCTGTCGATCTATTGATGTCGGCAAACCTTGCGGAAGCGATCGAGCTTGCCAATGAAATCAATGATATCAATAAAGAA
CGGCAAGCCATGGTCGCTACGATGGCGGAAGAGGCGATCAAGGAAGTCGAGGAAAACTTCCCGCCGGCATCCAATGGTGT
GCTCATCATCGGAAGGGAAGGCTGGAATGCAGGAGTGGTGGGGATCGTCGCCTCCAAGCTTGTTGAACGCTTTTACCGTC
CCACGATCGTTTTGAGCTATGACCAGGAAAAGGAATTGGCGAAAGGTTCTGCACGGAGCATCGCCGGATTCGATCTTTTC
GAAAGCCTTTCGTCCTGCCGGGAATTGCTGCCCCATTTTGGCGGACATCCGATGGCAGCTGGAATGACATTGAAAATAGA
AGATGTTCAGGAGCTTAGGGACCGCATGAACGCGATAGCCAAGGAACAGCTAACGGAGGAGGACTTCACGCCCATTACTG
ACTTGGATGGGGAGACGGCCTTGGCTGACGTTTCGATTCAAACGATTCAGGAGATGAGCTTGCTTGCTCCATTTGGGGTG
ACGAATCCGAAGCCGAGGATTTTGATAGATTCCGTTCAGCTTTCAAGTGTCCGCAAAATCGGTGCGAACCAAAATCATTT
GAAAGTTCAGCTTGAAGACGGGGACAATCACAAACTGGACGGCGTAGGCTTCGGGCTCGGTCACTTTGTCGATGAAATAG
CCCCTCACGCTGAAGTTTCAATGATCGGGGAGCTATCCATCAATGAATGGAATAATATGAAGAAGCCTCAGATCTTTGTC
CAGGACATTTCGGTGGACCATTGGCAGCTATTCGATTATCGCGGGAAGGGACAGACGGAAAAATGGCTGGCGGACATTCC
CGCAAACCGGAAAATCGTCATTTTCTCGGAGGATATTCTTGCAAGGCATCCATTTTTACAAAATCATCCCGAACTTGTCC
ATATCAAGAACGGGGAGGATGCCGATCAACTCGATTGCTTCGGGGCGCATGTCGTTTTCATGGACATGCCTCCATTAAGG
GATGTTTTGAAACGGGTGATTGCCAATAAGCAGCCATCGCGCATTTATGCCCATTTTTCCCATGATCAGGATCATTTTTT
AAGCACGATGCCGACAAGGGATCATTTTAAATGGTTTTATGCCTTTCTGGCAAAAAAGGGTCCGCTCGACGTGAAACGGT
ATGGAGATGACTTGGCCAAATACCGCGGCTGGTCCAGGGATACGGTCGATTTCATTTCAAAGGTGTTTTTTGAGCTGGAT
TTTGTTACAATAGAGAATGGGTTAATTATGCTCACAACCAATGCGAAAAAACGCGATCTCAGTGAATCTGAATCGTTCAT
AAGAAAGAAAGAGCAATTTGAGCTTGAACAAGAGCTTGTTTATTCTTCCTATCAGCAATTATTCGATTGGTTCAATCTTT
ATTTAGTTCATGAGGCAACAGACCTTGAGGAGGAAACAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(456-562)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(305-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-771)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B3XRN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.924

100

0.551

Multiple sequence alignment