Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABE28_RS00445 Genome accession   NZ_CP017080
Coordinates   87987..89375 (+) Length   462 a.a.
NCBI ID   WP_064462522.1    Uniprot ID   -
Organism   Peribacillus muralis strain G25-68     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 82987..94375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE28_RS00425 (ABE28_000425) - 83112..83573 (+) 462 WP_064462518.1 CtsR family transcriptional regulator -
  ABE28_RS00430 (ABE28_000430) - 83595..84146 (+) 552 WP_064462519.1 UvrB/UvrC motif-containing protein -
  ABE28_RS00435 (ABE28_000435) - 84143..85219 (+) 1077 WP_064462520.1 protein arginine kinase -
  ABE28_RS00440 (ABE28_000440) clpC 85349..87790 (+) 2442 WP_064462521.1 ATP-dependent protease ATP-binding subunit ClpC -
  ABE28_RS00445 (ABE28_000445) radA 87987..89375 (+) 1389 WP_064462522.1 DNA repair protein RadA Machinery gene
  ABE28_RS00450 (ABE28_000450) disA 89378..90451 (+) 1074 WP_064462523.1 DNA integrity scanning diadenylate cyclase DisA -
  ABE28_RS00455 (ABE28_000455) - 90672..91766 (+) 1095 WP_064462524.1 PIN/TRAM domain-containing protein -
  ABE28_RS00460 (ABE28_000460) ispD 91788..92471 (+) 684 WP_064462525.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ABE28_RS00465 (ABE28_000465) ispF 92486..92965 (+) 480 WP_064462526.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50210.86 Da        Isoelectric Point: 8.4653

>NTDB_id=195263 ABE28_RS00445 WP_064462522.1 87987..89375(+) (radA) [Peribacillus muralis strain G25-68]
MAVKKKTKFMCQSCGYESAKWMGKCPGCGEWNKMVEETEIVKPARKGAFTHSEVRASGEREKAAPITTIQSEKEPRIKTD
LMELNRALGGGIVQGSLVLIGGDPGIGKSTLLLQVSSQLAHKQKKVLYISGEESVKQTKLRADRLGTMSENLFVYAETDM
DYIQQAITEVKPDLVIIDSIQTVYHSEVTSAPGSVSQVRECTASLMRIAKTNGVAIFIVGHVTKEGAIAGPRLLEHMVDT
VLYFEGERHHTYRIIRAVKNRFGSTNEMGIFEMKEHGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALIS
PTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAISIASSFRDKPTNPTDCIIGE
VGLTGEVRRVSRIEQRVQEAAKLGFNRVIIPANNIGGWTAPKGIKIVGVSSVSEALKHSLGG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=195263 ABE28_RS00445 WP_064462522.1 87987..89375(+) (radA) [Peribacillus muralis strain G25-68]
ATGGCAGTAAAGAAGAAAACCAAATTCATGTGTCAGTCTTGCGGATATGAATCTGCGAAATGGATGGGGAAATGCCCAGG
CTGCGGAGAATGGAATAAGATGGTCGAGGAAACTGAAATCGTGAAACCCGCGAGGAAAGGAGCCTTTACCCATTCGGAAG
TCAGAGCCTCTGGAGAACGTGAAAAGGCAGCACCGATAACAACCATCCAGTCTGAAAAGGAACCACGGATCAAGACCGAT
TTAATGGAATTGAATCGTGCCCTTGGCGGCGGGATCGTCCAAGGGTCACTTGTTTTAATTGGAGGCGATCCGGGTATTGG
GAAATCCACCCTGCTTCTGCAGGTATCTTCCCAATTGGCACACAAGCAGAAAAAGGTGCTGTATATATCCGGTGAAGAAT
CTGTCAAGCAGACAAAGTTGAGAGCCGACCGGCTGGGGACAATGTCTGAAAACCTGTTCGTCTATGCGGAAACGGATATG
GACTATATCCAACAGGCAATTACAGAGGTGAAACCGGATTTGGTCATTATTGATTCGATCCAGACGGTGTACCATTCGGA
AGTGACATCTGCCCCTGGAAGTGTATCACAAGTGCGGGAATGTACAGCCTCACTGATGCGTATCGCTAAAACGAATGGGG
TTGCGATTTTTATCGTCGGGCACGTAACCAAGGAAGGTGCGATTGCCGGTCCGCGTCTGCTTGAGCATATGGTGGATACC
GTATTATATTTCGAAGGTGAAAGGCACCATACATATCGAATTATCCGTGCGGTCAAAAACCGTTTTGGTTCTACGAATGA
AATGGGTATCTTTGAAATGAAGGAACATGGTTTGGAGGAAGTGGCGAATCCATCGGAAATATTCCTTGAGGAACGGTCGC
AAGGTGCATCAGGTTCCACCGTCGTCGCCTCGATGGAAGGAACGAGGCCGGTGCTCGTCGAGATTCAAGCATTGATTTCA
CCTACGAGTTTTGGAAATCCAAGGAGAATGGCAACAGGTATTGATCACAATCGTGTTTCTCTGCTCATGGCTGTTTTGGA
AAAGAGGGTGGGCTTGCTGCTGCAAAACCAGGATGCGTACTTAAAGGTGGCTGGCGGTGTCAAGCTGGATGAGCCGGCAA
TTGACCTGGCTGTAGCGATCAGCATCGCTTCGAGCTTCCGTGATAAACCAACGAACCCAACCGATTGCATCATTGGGGAA
GTGGGGCTTACAGGAGAAGTGAGAAGGGTTTCGCGAATAGAACAAAGAGTACAGGAAGCAGCAAAACTAGGATTTAACCG
GGTCATAATCCCGGCTAATAATATCGGGGGATGGACCGCGCCGAAAGGTATCAAGATCGTCGGGGTATCATCAGTTTCGG
AGGCTCTTAAACATTCGTTAGGGGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(369-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

76.957

99.567

0.766
  radA Streptococcus mitis NCTC 12261

61.894

98.268

0.608
  radA Streptococcus mitis SK321

61.674

98.268

0.606
  radA Streptococcus pneumoniae TIGR4

61.454

98.268

0.604
  radA Streptococcus pneumoniae D39

61.454

98.268

0.604
  radA Streptococcus pneumoniae Rx1

61.454

98.268

0.604
  radA Streptococcus pneumoniae R6

61.454

98.268

0.604

Multiple sequence alignment