Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BGM23_RS16440 Genome accession   NZ_CP017072
Coordinates   3174240..3174818 (-) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus sp. FJAT-14266     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3169240..3179818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGM23_RS16405 (BGM23_16405) lepB 3169245..3169751 (-) 507 WP_003233128.1 signal peptidase I -
  BGM23_RS16410 (BGM23_16410) - 3169753..3170376 (-) 624 WP_010886465.1 VTT domain-containing protein -
  BGM23_RS16415 (BGM23_16415) - 3170528..3170890 (+) 363 WP_003233132.1 hypothetical protein -
  BGM23_RS16420 (BGM23_16420) - 3171098..3171298 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  BGM23_RS16425 (BGM23_16425) - 3171295..3172764 (+) 1470 WP_029726292.1 sodium:solute symporter -
  BGM23_RS16430 (BGM23_16430) - 3172808..3173077 (-) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  BGM23_RS16435 (BGM23_16435) - 3173294..3174193 (+) 900 WP_003245421.1 SDR family oxidoreductase -
  BGM23_RS16440 (BGM23_16440) comK 3174240..3174818 (-) 579 WP_029317573.1 competence transcription factor ComK Regulator
  BGM23_RS16445 (BGM23_16445) - 3175111..3175344 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  BGM23_RS16450 (BGM23_16450) - 3175372..3176229 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  BGM23_RS16455 (BGM23_16455) - 3176341..3177870 (+) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  BGM23_RS16460 (BGM23_16460) hemAT 3178009..3179307 (+) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=195213 BGM23_RS16440 WP_029317573.1 3174240..3174818(-) (comK) [Bacillus sp. FJAT-14266]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=195213 BGM23_RS16440 WP_029317573.1 3174240..3174818(-) (comK) [Bacillus sp. FJAT-14266]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment