Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BGM23_RS14245 Genome accession   NZ_CP017072
Coordinates   2773865..2774143 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus sp. FJAT-14266     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2768865..2779143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGM23_RS14225 (BGM23_14225) ade 2768929..2770662 (-) 1734 WP_032721495.1 adenine deaminase -
  BGM23_RS14230 (BGM23_14230) ktrC 2770818..2771483 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  BGM23_RS14235 (BGM23_14235) - 2771546..2772373 (-) 828 WP_003232330.1 gamma-glutamylcyclotransferase -
  BGM23_RS14240 (BGM23_14240) kinC 2772389..2773675 (-) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  BGM23_RS14245 (BGM23_14245) abrB 2773865..2774143 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  BGM23_RS14250 (BGM23_14250) mreBH 2774427..2775434 (+) 1008 WP_029727190.1 cell shape-determining protein MreBH -
  BGM23_RS14255 (BGM23_14255) - 2775535..2775669 (+) 135 WP_003238865.1 protein YkpC -
  BGM23_RS14260 (BGM23_14260) - 2775778..2777010 (+) 1233 WP_003232341.1 aminopeptidase -
  BGM23_RS14265 (BGM23_14265) - 2777044..2777955 (-) 912 WP_038427635.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=195200 BGM23_RS14245 WP_003244728.1 2773865..2774143(-) (abrB) [Bacillus sp. FJAT-14266]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=195200 BGM23_RS14245 WP_003244728.1 2773865..2774143(-) (abrB) [Bacillus sp. FJAT-14266]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment