Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BGM23_RS10980 Genome accession   NZ_CP017072
Coordinates   2071366..2071986 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus sp. FJAT-14266     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2066366..2076986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGM23_RS10960 (BGM23_10960) dnaD 2066657..2067355 (+) 699 WP_029726781.1 DNA replication protein DnaD -
  BGM23_RS10965 (BGM23_10965) nth 2067374..2068033 (+) 660 WP_029726782.1 endonuclease III -
  BGM23_RS10970 (BGM23_10970) - 2068030..2068524 (+) 495 WP_029726783.1 YpoC family protein -
  BGM23_RS10975 (BGM23_10975) - 2068600..2071344 (-) 2745 WP_029726784.1 PBP1A family penicillin-binding protein -
  BGM23_RS10980 (BGM23_10980) recU 2071366..2071986 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  BGM23_RS10985 (BGM23_10985) - 2072027..2072989 (+) 963 WP_029726785.1 DUF2515 domain-containing protein -
  BGM23_RS10990 (BGM23_10990) sspM 2073014..2073118 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  BGM23_RS10995 (BGM23_10995) - 2073317..2073562 (+) 246 WP_015251831.1 YppD family protein -
  BGM23_RS11000 (BGM23_11000) - 2073608..2073979 (+) 372 WP_029726786.1 YppE family protein -
  BGM23_RS11005 (BGM23_11005) - 2074021..2074209 (-) 189 WP_003230690.1 YppF family protein -
  BGM23_RS11010 (BGM23_11010) - 2074397..2074774 (+) 378 WP_015251832.1 YppG family protein -
  BGM23_RS11015 (BGM23_11015) - 2074795..2075214 (-) 420 WP_015714150.1 Hsp20/alpha crystallin family protein -
  BGM23_RS11020 (BGM23_11020) - 2075352..2075858 (+) 507 WP_015483368.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=195194 BGM23_RS10980 WP_004399067.1 2071366..2071986(-) (recU) [Bacillus sp. FJAT-14266]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=195194 BGM23_RS10980 WP_004399067.1 2071366..2071986(-) (recU) [Bacillus sp. FJAT-14266]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment