Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   BGM23_RS09985 Genome accession   NZ_CP017072
Coordinates   1894157..1894960 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus sp. FJAT-14266     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1889157..1899960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGM23_RS09960 (BGM23_09960) - 1889267..1890112 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  BGM23_RS09965 (BGM23_09965) argR 1890210..1890659 (+) 450 WP_003230265.1 arginine repressor ArgR -
  BGM23_RS09970 (BGM23_09970) recN 1890696..1892426 (+) 1731 WP_029726732.1 DNA repair protein RecN Machinery gene
  BGM23_RS09975 (BGM23_09975) spoIVB 1892601..1893881 (+) 1281 WP_004398697.1 SpoIVB peptidase -
  BGM23_RS09985 (BGM23_09985) spo0A 1894157..1894960 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  BGM23_RS09995 (BGM23_09995) - 1895425..1896543 (-) 1119 WP_029726733.1 NADH-dependent flavin oxidoreductase -
  BGM23_RS21855 (BGM23_10000) - 1896616..1896768 (-) 153 WP_014480226.1 hypothetical protein -
  BGM23_RS10005 (BGM23_10005) - 1897076..1897372 (+) 297 WP_014480225.1 hypothetical protein -
  BGM23_RS10010 (BGM23_10010) - 1897392..1898012 (+) 621 WP_072692696.1 N-acetylmuramoyl-L-alanine amidase -
  BGM23_RS10015 (BGM23_10015) - 1898091..1898822 (+) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=195193 BGM23_RS09985 WP_003226427.1 1894157..1894960(+) (spo0A) [Bacillus sp. FJAT-14266]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=195193 BGM23_RS09985 WP_003226427.1 1894157..1894960(+) (spo0A) [Bacillus sp. FJAT-14266]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCTGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment