Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BGM23_RS09445 Genome accession   NZ_CP017072
Coordinates   1804286..1805053 (+) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus sp. FJAT-14266     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1799286..1810053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGM23_RS09415 (BGM23_09415) pgpH 1799582..1801717 (+) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -
  BGM23_RS09420 (BGM23_09420) ybeY 1801718..1802191 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  BGM23_RS09425 (BGM23_09425) - 1802172..1802543 (+) 372 WP_004398824.1 diacylglycerol kinase family protein -
  BGM23_RS09430 (BGM23_09430) - 1802662..1803072 (+) 411 WP_003230049.1 cytidine deaminase -
  BGM23_RS09435 (BGM23_09435) era 1803053..1803958 (+) 906 WP_003230051.1 GTPase Era -
  BGM23_RS09440 (BGM23_09440) - 1804106..1804249 (+) 144 WP_003230053.1 YqzL family protein -
  BGM23_RS09445 (BGM23_09445) recO 1804286..1805053 (+) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  BGM23_RS09450 (BGM23_09450) glyQ 1805351..1806238 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  BGM23_RS09455 (BGM23_09455) glyS 1806231..1808270 (+) 2040 WP_029726706.1 glycine--tRNA ligase subunit beta -
  BGM23_RS09460 (BGM23_09460) ccpN 1808403..1809041 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  BGM23_RS09465 (BGM23_09465) - 1809067..1809879 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=195182 BGM23_RS09445 WP_003230055.1 1804286..1805053(+) (recO) [Bacillus sp. FJAT-14266]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=195182 BGM23_RS09445 WP_003230055.1 1804286..1805053(+) (recO) [Bacillus sp. FJAT-14266]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment