Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BGM23_RS07890 Genome accession   NZ_CP017072
Coordinates   1534124..1534870 (+) Length   248 a.a.
NCBI ID   WP_072692713.1    Uniprot ID   -
Organism   Bacillus sp. FJAT-14266     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1529124..1539870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BGM23_RS07875 (BGM23_07875) - 1529349..1529540 (-) 192 WP_003222590.1 hypothetical protein -
  BGM23_RS07880 (BGM23_07880) valS 1529988..1532630 (+) 2643 WP_029727115.1 valine--tRNA ligase -
  BGM23_RS07885 (BGM23_07885) - 1532690..1533982 (+) 1293 WP_029727116.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  BGM23_RS07890 (BGM23_07890) comC 1534124..1534870 (+) 747 WP_072692713.1 A24 family peptidase Machinery gene
  BGM23_RS07895 (BGM23_07895) spoIIB 1535004..1535999 (+) 996 WP_038427816.1 stage II sporulation protein SpoIIB -
  BGM23_RS07900 (BGM23_07900) - 1536152..1536721 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  BGM23_RS07905 (BGM23_07905) radC 1536758..1537453 (+) 696 WP_046663848.1 DNA repair protein RadC -
  BGM23_RS07910 (BGM23_07910) mreB 1537545..1538558 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  BGM23_RS07915 (BGM23_07915) mreC 1538589..1539461 (+) 873 WP_003222609.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26453.01 Da        Isoelectric Point: 9.7944

>NTDB_id=195174 BGM23_RS07890 WP_072692713.1 1534124..1534870(+) (comC) [Bacillus sp. FJAT-14266]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPATELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=195174 BGM23_RS07890 WP_072692713.1 1534124..1534870(+) (comC) [Bacillus sp. FJAT-14266]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAACAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGGCTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment